Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0256
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)               79   2e-15
SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_37338| Best HMM Match : FMO-like (HMM E-Value=2.1e-21)              28   6.4  
SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)               27   8.5  
SB_16000| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=5.5e-14)       27   8.5  

>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
          Length = 373

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 37/103 (35%), Positives = 58/103 (56%)
 Frame = +2

Query: 194 GFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMRKYLDQPIFSRIKYEHPEYFKKI 373
           GFLGK  +EKL  SC  +  IY+L R +     ++R+   L   +F  ++   P+   K+
Sbjct: 20  GFLGKVLLEKLLRSCRTVKCIYLLTRSRADHTPQQRIDNMLQTRLFQNVRENDPDQLDKV 79

Query: 374 IPISGDITAPKLGLCDEERNILINEVSIVIHSAASVKLNDHLK 502
             I+GDI    LGL  E+  ++I  V IV HSAA+V+ ++ L+
Sbjct: 80  TAITGDIAEADLGLSPEDMALIIGSVQIVFHSAATVRFDEELR 122


>SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 413 LCDEERNILINEVSIVIHSAASVKLNDHLKFTLNTNVG 526
           L +E +NI + E +I        KL   +KF LNTN G
Sbjct: 173 LLEEIKNITVQENTITSLKPREKKLVAQMKFFLNTNFG 210


>SB_37338| Best HMM Match : FMO-like (HMM E-Value=2.1e-21)
          Length = 433

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 90  RVISKMSHNGTLDEHYQTVREFYDGKSVFITGSDR 194
           R+ SKM   G L++HY       DGK+VF  G +R
Sbjct: 226 RIPSKMP--GNLEQHYGIKELTSDGKAVFKDGQER 258


>SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)
          Length = 196

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 203 GKAYVEKLAYSCPGIVSIYILIRD-KKGSNTEERMRKYLDQPIFSRIKY 346
           G+ Y+E +  S   +V+ Y  +++ +KG N    MRK L Q  F R+ +
Sbjct: 83  GERYLEWILISRRRLVNRYYQVKESEKGHNLPPDMRKELAQWEFDRVDF 131


>SB_16000| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=5.5e-14)
          Length = 628

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 275 KKGSNTEERMRKYLDQPIFSRIKYEHPEYFKKI 373
           K  S  +  + +Y ++ ++ RI YE PE+ K +
Sbjct: 532 KNWSKADVALYEYFNKTLWQRISYEEPEFSKDL 564


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,210,065
Number of Sequences: 59808
Number of extensions: 350799
Number of successful extensions: 787
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)