Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0255
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   7.2  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   7.2  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   9.5  

>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 288 LPYPSNRNALLLHGRNR 238
           LPY  N   L LHG NR
Sbjct: 198 LPYTGNSRGLYLHGLNR 214


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 86  PKLAKSVQPFSSFSETNKQQFIF 154
           P+L +S++P+ S  + + Q+FIF
Sbjct: 920 PQLVRSLKPYISVLKQDHQEFIF 942


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 280  PFKPKRITTSRQK*AGWRYLPVRTHKRSYY 191
            P  P+ IT +     GW Y+  R  K++YY
Sbjct: 1163 PPLPENITNTEY---GWGYILTRAEKKAYY 1189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,736
Number of Sequences: 5004
Number of extensions: 39938
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)