Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0255
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)                    29   3.2  
SB_48524| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)                 27   9.8  

>SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)
          Length = 589

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = +3

Query: 222 RYRHPAYFCREVVMRFGLKGRAAVVTILRH*NLYLEVGGAFTL*MSMGSS 371
           R++HP YF   VVM       A ++TI+RH   Y+ V   F + MS+ SS
Sbjct: 429 RHKHP-YFYPVVVMN------AIIITIIRHYLHYVVVINIFIIDMSISSS 471


>SB_48524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -2

Query: 449 PESLIKHFFYCLDGWSSSQPTWC*VLTGAHGHLQRKCATH 330
           P++++  F   LDG+SSS  T C V TG H  L+   A H
Sbjct: 22  PDAMLGEFCTHLDGFSSSFKTPCVVFTG-HPSLRYGDAVH 60


>SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)
          Length = 896

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -1

Query: 339 RHPPRDISFNVSV*LQRLPYPSNRNALLLHGRNRQGGGTYPCALTRGPTTST 184
           RHPPR     ++    RLP+P+ R  +L   R           +   P TST
Sbjct: 463 RHPPRTTGPELAC-PNRLPHPTRRPGVLYRDRTPPSSANATNMVEEVPLTST 513


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,210,590
Number of Sequences: 59808
Number of extensions: 302984
Number of successful extensions: 616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)