Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0255
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   6.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 294 QRLPYPSNRNALL-LHGRNRQGGGTYPCALTR 202
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 294 QRLPYPSNRNALL-LHGRNRQGGGTYPCALTR 202
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 503 LMYYELQNIVVNNSDT 456
           LM Y L NIV+ +SDT
Sbjct: 322 LMEYCLVNIVLGDSDT 337


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 217 VRTHKRSYYQYLTKQILIYIYKNELLFVSLAKT*ERLD 104
           V T   +Y  YL K  L+Y       F+++     RLD
Sbjct: 650 VATSMPTYICYLGKAYLMYAIAGSQCFINIWLLGSRLD 687


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 171 Y*SIYIKMNCCLLVSLKLENGWTD 100
           Y  I I + CC+LV +   + W D
Sbjct: 243 YYLIQIYIPCCMLVIVSWVSFWLD 266


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 171 Y*SIYIKMNCCLLVSLKLENGWTD 100
           Y  I I + CC+LV +   + W D
Sbjct: 243 YYLIQIYIPCCMLVIVSWVSFWLD 266


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 388 VGCELDHPSKQ*KKCFINDSG 450
           +GCE    + + K CF  D G
Sbjct: 433 IGCECKTCNSKTKCCFAQDDG 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,304
Number of Sequences: 438
Number of extensions: 3029
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)