Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0255
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica...    29   2.6  
At1g01900.1 68414.m00107 subtilase family protein contains simil...    28   4.6  
At5g35110.1 68418.m04154 hypothetical protein predicted protein,...    27   6.1  

>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
            domain-containing protein similar to transcriptional
            activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
            profiles PF00271: Helicase conserved C-terminal domain,
            PF00176: SNF2 family N-terminal domain
          Length = 2055

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +3

Query: 219  GRYRHPAYFC---REVVMRFGLKGRAAVV 296
            GRYRHPAY C   RE++ R  L    + V
Sbjct: 1711 GRYRHPAYCCERYRELIQRHILSASDSAV 1739


>At1g01900.1 68414.m00107 subtilase family protein contains
           similarity to cucumisin-like serine protease GB:AAC18851
           GI:3176874 from [Arabidopsis thaliana]
          Length = 774

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 387 LVLSAYWSPWTSTT*MRHPPRDISFNV 307
           L + A WSP++S + +R  PR + FN+
Sbjct: 521 LNILAGWSPFSSPSLLRSDPRRVQFNI 547


>At5g35110.1 68418.m04154 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 112

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 297 LQRLPYPSNRNALLLHGRNRQGGGTYPC 214
           +QR PY  N    L H R+R GG   PC
Sbjct: 25  IQRRPYHKNCGCAL-HERSRGGGSATPC 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,603,731
Number of Sequences: 28952
Number of extensions: 207932
Number of successful extensions: 329
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)