Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0254
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo...    28   0.98 
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   1.7  
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce...    27   2.3  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    26   3.0  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   5.2  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   5.2  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    25   5.2  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   6.9  

>SPCC4B3.18 |||phosphopantothenate-cysteine
           ligase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 316

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 401 PLETRFESTNKTSKKQWYGRQRLGSTXWHC*SLWATVTTHH 279
           P    FE +N + +K W  +Q   ST ++  +   T T HH
Sbjct: 102 PWTNLFERSNGSQEKPWIVKQEFQSTVFNALNELDTYTKHH 142


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 402 NSKQFFNIDKFINKIKSQFH 461
           NSK   +ID F+NK++S++H
Sbjct: 853 NSKGKLSIDHFLNKVQSRWH 872


>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -3

Query: 173 NVTIGTYGRIWG 138
           NVTIGTYG  WG
Sbjct: 130 NVTIGTYGFCWG 141


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 354 LFLTRLISRLETSFQRNSK 410
           L LTRLI +   SFQRN K
Sbjct: 193 LLLTRLIVQFRKSFQRNDK 211


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 185 VEPPTVCLSNLTWINILFFIALVGRRAYGPPDGEWLPSPID 307
           +EP    LS+L   NI   +   GR  Y  PDG + P   D
Sbjct: 223 LEPIAKMLSSLLPSNITAILYPDGRGLYQNPDGTFSPGSTD 263


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 158  FRLSHFLIHVEPPTVCLSNLTWINILFFIALVGRRAYGPP 277
            F LSH L+ ++ P + +  +  ++ +    LV  R   PP
Sbjct: 1621 FLLSHLLLFLQAPVILIPYIDKLHSIILFWLVPSRQIRPP 1660


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 509 RLPGTSINHVFIPSTTMELRFYFINEF-IDIKELLTIPLETRFESTN 372
           RLP TS+    +P T++  R   I++F  + KELL+  L  RF  T+
Sbjct: 90  RLPSTSVRQHNLPITSLVSRAIDISQFKKEEKELLSTQL-IRFLDTD 135


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 159 NLWQDLGEAYAKAKQSLSMSNVYTNRMYLN 70
           N W  LGEAYA++ + +S    +     L+
Sbjct: 685 NAWSGLGEAYARSGRYVSALKAFNRASILD 714


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,936
Number of Sequences: 5004
Number of extensions: 46559
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)