Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0254
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196...    32   0.25 
07_01_0843 - 6851354-6851518,6851654-6852448                           29   2.3  
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817           28   4.0  
05_01_0575 + 5112988-5114082                                           28   5.3  
02_01_0517 + 3733921-3735012                                           28   5.3  
01_06_1781 + 39832977-39833284,39835083-39835261,39836085-398361...    28   5.3  
01_01_1181 + 9410310-9411329                                           27   9.2  

>02_05_0888 - 32517876-32518087,32518320-32518694,32519551-32519638,
            32520145-32520384,32521033-32521149,32521213-32521606,
            32521752-32521998,32522086-32522315,32522768-32522823,
            32522903-32523094,32523274-32523376,32523478-32523544,
            32524312-32525154,32525547-32525670,32525965-32526213,
            32526354-32526443,32526530-32526649,32526664-32526738,
            32527001-32527147,32527255-32527365,32527446-32527667,
            32527777-32527896,32527971-32528270,32528355-32528480,
            32529246-32529360,32529556-32530019,32530119-32530253,
            32530684-32530788,32530876-32531053,32531143-32531864
          Length = 2188

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 493  QSITYLSLVLQ-WNCDFILLMNLSILKNCLLFRWKLV 386
            QSI Y   +   WNC F+  +N   ++N L FRW  V
Sbjct: 1367 QSIDYTCSIFGCWNCLFVNTLNSGSIQNILQFRWDCV 1403


>07_01_0843 - 6851354-6851518,6851654-6852448
          Length = 319

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -2

Query: 297 DGNHSPSGGPYARLPTRAIKKRILIHVRLDRQTVGGSTWMRKCDNRNLWQDLGEAYAKAK 118
           D   + S G    LPT A K + L ++R    T   + +M + D + LW  L + Y    
Sbjct: 41  DPTIATSAGGVNNLPTSAEKNQALHYLRHHLNTTLKNEYMTEEDPKVLWDSLKDRYGHQV 100

Query: 117 QSL 109
           ++L
Sbjct: 101 KAL 103


>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
          Length = 883

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +1

Query: 139 PQILP*VPIVTFPHPRRTPYGLSVQPDVD*YSFFYCPCRQTSIRP 273
           P   P VP    P P   P G ++ P +  YSF Y     +S  P
Sbjct: 299 PAPAPPVPTPLAPTPADVPPGFTMSPTITRYSFGYDGASSSSAMP 343


>05_01_0575 + 5112988-5114082
          Length = 364

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -2

Query: 297 DGNHSPSGGPYARLPTRAIKKRILIHVRLDRQTVGGSTWMRKCDNRNLWQDLGEAYAKAK 118
           D   + S G    LPT A K + L  +R    T   + +M + D + LW  L + Y    
Sbjct: 41  DPTIATSAGGVNNLPTSAEKNQALHFLRHHLNTTLKNEYMTEEDPKVLWDSLKDRYGHQV 100

Query: 117 QSL 109
           ++L
Sbjct: 101 KAL 103


>02_01_0517 + 3733921-3735012
          Length = 363

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -2

Query: 297 DGNHSPSGGPYARLPTRAIKKRILIHVRLDRQTVGGSTWMRKCDNRNLWQDLGEAYAKAK 118
           D   + S G    LPT A K + L  +R    T   + +M + D + LW  L + Y    
Sbjct: 41  DPTIATSAGGVNNLPTSAEKNQALHFLRHHLNTTLKNEYMTEEDPKVLWDSLKDRYGHQV 100

Query: 117 QSL 109
           ++L
Sbjct: 101 KAL 103


>01_06_1781 +
           39832977-39833284,39835083-39835261,39836085-39836170,
           39836205-39836293,39837477-39837579,39837940-39837968,
           39838668-39838830,39838901-39838954,39839443-39839621,
           39839869-39840001
          Length = 440

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -1

Query: 118 TIFVDVKCLH*QNVPKYELRLLIKASSP 35
           +I  DVK L+ + +PKY  R+LI +++P
Sbjct: 331 SISYDVKVLNKERLPKYARRMLIGSTAP 358


>01_01_1181 + 9410310-9411329
          Length = 339

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -2

Query: 297 DGNHSPSGGPYARLPTRAIKKRILIHVRLDRQTVGGSTWMRKCDNRNLWQDLGEAYAKAK 118
           D   + S G    LPT A K + L  +R    T   + +M + D   LW  L + Y    
Sbjct: 13  DPTIATSAGGVNNLPTSAEKNQALHFLRHHLNTTLKNEYMTEEDPNVLWDSLKDRYGHQV 72

Query: 117 QSL 109
           ++L
Sbjct: 73  KAL 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,414,140
Number of Sequences: 37544
Number of extensions: 336412
Number of successful extensions: 750
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)