Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0254
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y08637-1|CAA69927.1|  487|Caenorhabditis elegans nicotinic acety...    28   3.6  
U23525-2|AAK71378.1|  487|Caenorhabditis elegans Acetylcholine r...    28   3.6  
AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical...    28   3.6  
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical...    28   3.6  
AC006673-7|AAF39925.2|  332|Caenorhabditis elegans Serpentine re...    28   3.6  
U80452-14|AAB37849.1|  157|Caenorhabditis elegans Hypothetical p...    27   8.2  
AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear recep...    27   8.2  
AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormo...    27   8.2  
AF077530-1|AAC26266.1|  441|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Y08637-1|CAA69927.1|  487|Caenorhabditis elegans nicotinic
           acetylcholine receptorsubunit ACR-3 protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 272 PPDGEWLPSPIDFSNAXG*SQAAAYRTIV 358
           PPD  WLP  + F+NA G    + Y  +V
Sbjct: 104 PPDKVWLPDIVLFNNADGNYLVSFYSNVV 132


>U23525-2|AAK71378.1|  487|Caenorhabditis elegans Acetylcholine
           receptor protein 3 protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 272 PPDGEWLPSPIDFSNAXG*SQAAAYRTIV 358
           PPD  WLP  + F+NA G    + Y  +V
Sbjct: 104 PPDKVWLPDIVLFNNADGNYLVSFYSNVV 132


>AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical
           protein Y105C5B.21b protein.
          Length = 1084

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 182 HVEPPTVC-LSNLTWINILFFIALVGRRAYGPPDGEWLPSPIDFS 313
           H+   T C ++NLT   + F ++  GR  +GP     LP  I  S
Sbjct: 88  HLLKDTTCRVTNLTSHEVQFRVSAYGRTGFGPASNPSLPVKIPIS 132


>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
           protein Y105C5B.21a protein.
          Length = 1254

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 182 HVEPPTVC-LSNLTWINILFFIALVGRRAYGPPDGEWLPSPIDFS 313
           H+   T C ++NLT   + F ++  GR  +GP     LP  I  S
Sbjct: 258 HLLKDTTCRVTNLTSHEVQFRVSAYGRTGFGPASNPSLPVKIPIS 302


>AC006673-7|AAF39925.2|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein4 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 116 CFAFA*ASPKSCHKFRLSHFLIHVEPPTVCLSNLTWINILFFIALV 253
           CFA+  AS  S   FR+   ++H    T     + +I   F++++V
Sbjct: 100 CFAYTGASAISLFVFRMEAVIVHRTEQTFLRKVVKYIQYAFYVSIV 145


>U80452-14|AAB37849.1|  157|Caenorhabditis elegans Hypothetical
           protein C16C8.9 protein.
          Length = 157

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 336 PLPTVPLFLTRLISRLETSFQRNSKQFFNIDKFINKIKS 452
           P P +  + T  IS L+    +N++QFF   KFI  +KS
Sbjct: 29  PRPPLDEYATSTISLLDQYAWQNAEQFFT--KFIKTVKS 65


>AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear receptor
           NHR-121 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +3

Query: 330 AKPLPTVPLFLTRLISRLETSFQRNSKQFFNIDKFINKIKSQFHCSTRDKYVID*CSG 503
           A P PTVP   T ++++ E  ++ +S +      + + I  +   S   K  +  CSG
Sbjct: 121 APPTPTVPQTTTVIVTKDERIYEDSSPEIHYAQSYSSSISEEI-SSLSPKISVSMCSG 177


>AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 121 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +3

Query: 330 AKPLPTVPLFLTRLISRLETSFQRNSKQFFNIDKFINKIKSQFHCSTRDKYVID*CSG 503
           A P PTVP   T ++++ E  ++ +S +      + + I  +   S   K  +  CSG
Sbjct: 121 APPTPTVPQTTTVIVTKDERIYEDSSPEIHYAQSYSSSISEEI-SSLSPKISVSMCSG 177


>AF077530-1|AAC26266.1|  441|Caenorhabditis elegans Hypothetical
           protein C40D2.3 protein.
          Length = 441

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 261 RLPTRAIKKRIL-IHVRLDRQTVGGSTWMRKCD-NRNLWQDLGEAYAK 124
           RL  +  KK  L IH+  +++T  G +W  +CD    L    G+ Y++
Sbjct: 178 RLRIQKYKKGFLGIHLLCEKETCDGRSWSIQCDYELQLISSKGKCYSR 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,244,354
Number of Sequences: 27780
Number of extensions: 277236
Number of successful extensions: 660
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)