Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0254
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   0.83 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 272 PPDGEWLPSPIDFSNAXG 325
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 155 KFRLSHFLIHVEPPTVCLSNLTWIN 229
           K RL ++L H   PT  +  ++W++
Sbjct: 241 KRRLGYYLFHTYIPTCLIVIMSWVS 265


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 179 IHVEPPTVCLSNLTWI 226
           + VEPP + +  LTW+
Sbjct: 332 VPVEPPDILMPALTWL 347


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 164 LSHFLIHVEPPTVCLSNLTWIN 229
           + +FLI V  P V L  L+W++
Sbjct: 213 MGNFLIQVYGPCVLLVVLSWVS 234


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 248 LVGRRAYGPPDGEWLP 295
           L+G R   PP  +W P
Sbjct: 408 LIGSRRTSPPPEDWKP 423


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 170 HFLIHVEPPTVCLSNLTWIN 229
           +FLI V  P V +  L+W++
Sbjct: 246 YFLIQVYVPCVLIVVLSWVS 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,420
Number of Sequences: 438
Number of extensions: 3309
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)