Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0254
         (526 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21940.2 68415.m02607 shikimate kinase, putative similar to s...    31   0.36 
At2g21940.1 68415.m02606 shikimate kinase, putative similar to s...    31   0.36 
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ...    28   4.4  
At3g46450.2 68416.m05036 SEC14 cytosolic factor family protein /...    27   7.7  
At3g46450.1 68416.m05035 SEC14 cytosolic factor family protein /...    27   7.7  

>At2g21940.2 68415.m02607 shikimate kinase, putative similar to
           shikimate kinase precursor from Lycopersicon esculentum
           [SP|Q00497]; contains Pfam shikimate kinase domain
           PF01202
          Length = 304

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 156 LWQDLGEAYAKAKQSLSMSNVYTNRMYLNTS 64
           +W + GEAY  A   +S+ N+   R Y N S
Sbjct: 242 IWDERGEAYTNANARVSLENIAAKRGYKNVS 272


>At2g21940.1 68415.m02606 shikimate kinase, putative similar to
           shikimate kinase precursor from Lycopersicon esculentum
           [SP|Q00497]; contains Pfam shikimate kinase domain
           PF01202
          Length = 303

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 156 LWQDLGEAYAKAKQSLSMSNVYTNRMYLNTS 64
           +W + GEAY  A   +S+ N+   R Y N S
Sbjct: 241 IWDERGEAYTNANARVSLENIAAKRGYKNVS 271


>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3
           Pfam PF00400: WD domain, G-beta repeats;
          Length = 1327

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 130 CESKTIFVDVKCLH*QNVPKYEL 62
           CE+K IF+D+  +  ++VPK EL
Sbjct: 60  CENKAIFLDLVTMRGRDVPKQEL 82


>At3g46450.2 68416.m05036 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; similar to
           polyphosphoinositide binding protein Ssh1p (GI:|2739044)
           {Glycine max}
          Length = 494

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +3

Query: 9   TLRTLIKIKGE------EAFINNLNSYLGTFC*CKHLTSTKIVLLSHRPPPNP 149
           T R  ++I+GE        ++  L SYLG+ C CK  ++     L+ + PP P
Sbjct: 373 TTRKKLRIEGETFHRVLSEYLQTLPSYLGSNCNCKRCSN-----LNEQDPPQP 420


>At3g46450.1 68416.m05035 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; similar to
           polyphosphoinositide binding protein Ssh1p (GI:|2739044)
           {Glycine max}
          Length = 486

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +3

Query: 9   TLRTLIKIKGE------EAFINNLNSYLGTFC*CKHLTSTKIVLLSHRPPPNP 149
           T R  ++I+GE        ++  L SYLG+ C CK  ++     L+ + PP P
Sbjct: 365 TTRKKLRIEGETFHRVLSEYLQTLPSYLGSNCNCKRCSN-----LNEQDPPQP 412


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,460,689
Number of Sequences: 28952
Number of extensions: 260224
Number of successful extensions: 590
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)