Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0251
(481 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53046| Best HMM Match : Cu-oxidase_3 (HMM E-Value=2.8e-31) 42 3e-04
SB_24810| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_47213| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_55288| Best HMM Match : TLD (HMM E-Value=0.00092) 29 2.0
SB_39378| Best HMM Match : VWA (HMM E-Value=0) 29 2.6
SB_54145| Best HMM Match : zf-CCHC (HMM E-Value=0.021) 28 3.5
SB_50178| Best HMM Match : F5_F8_type_C (HMM E-Value=0.6) 28 3.5
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 28 3.5
SB_39407| Best HMM Match : TIG (HMM E-Value=0) 28 4.6
SB_25850| Best HMM Match : XylR_N (HMM E-Value=9.8) 28 4.6
SB_21302| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-27) 27 6.1
SB_19820| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_1223| Best HMM Match : HEAT (HMM E-Value=0.0012) 27 6.1
SB_31322| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_4555| Best HMM Match : 7tm_1 (HMM E-Value=0.00038) 27 8.0
SB_3910| Best HMM Match : XylR_N (HMM E-Value=9.8) 27 8.0
>SB_53046| Best HMM Match : Cu-oxidase_3 (HMM E-Value=2.8e-31)
Length = 570
Score = 41.9 bits (94), Expect = 3e-04
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +2
Query: 113 LINGVGRFRVFNNDTEKPLYMKAARFNVEQGHRYRFRVINAEFLNCPIELSVDGHNITVI 292
L+NG GR N+T PL + F V+ G Y+ VIN + P ++D H +TV+
Sbjct: 144 LVNGKGRH---GNNTA-PLSI----FRVKPGSTYQLHVINTGLVY-PYRFAIDQHQLTVV 194
Query: 293 SSDGYDLEPI-VDS 331
SDG+ ++P+ VDS
Sbjct: 195 ESDGHRVKPVTVDS 208
>SB_24810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +2
Query: 71 TTSHSSGDNKPPTLLINGVGRFRVFNNDTEKPLYMKAARFNVEQGHRYRFRVINAEFLNC 250
T HS D K T+ I VG++ +F ++KP ++ ++ H + F + N N
Sbjct: 85 TAFHSGCDKKSVTITIARVGKY-IFGGYSDKP--WGEGKW-IKSNHSFIFSLFNIYGFN- 139
Query: 251 PIELSVDG 274
P++LS++G
Sbjct: 140 PLKLSLNG 147
>SB_47213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 110 GSEVCCRRRSGWWSVNIPTESSWIQSVTIIL 18
G + R S WWS N P S+ S+ ++L
Sbjct: 14 GDPLVLERASPWWSSNSPYSESYYNSLAVVL 44
>SB_55288| Best HMM Match : TLD (HMM E-Value=0.00092)
Length = 349
Score = 29.1 bits (62), Expect = 2.0
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = +2
Query: 71 TTSHSSGDNKPPTLLINGVGRFRVFNNDTEKPLYMKAARFNVEQGHRYRFRVINAEFLNC 250
+T HSS DNK PT+ I VG VF T++ R+ + + F + N E
Sbjct: 121 STFHSSCDNKGPTVTIVRVGE-NVFGGYTDRFWDNSRPRYKSSE-KSFLFTLFNTEGYK- 177
Query: 251 PIELSVDGHNITVISSDGYDLEPI 322
P +LS+ +V G PI
Sbjct: 178 PAKLSLKASPSSVAIDTGSGDGPI 201
>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
Length = 2865
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 304 IRFGAYRRFTKAKQVGVLHYEGAMEVEPAGDPTWEELHNEGLQLNALNKGEEEDE 468
I Y R TK Q+ ++ G + A D +E L NEG++L + G+E E
Sbjct: 586 IALAQYGRSTK--QIAII-LNGGKSTDDASDAAYE-LRNEGVELFVVGLGDENSE 636
>SB_54145| Best HMM Match : zf-CCHC (HMM E-Value=0.021)
Length = 286
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 278 NITVISSDGYDLEPIVDSLKLNKSEFCITKEPWKSNRLVTQH 403
NIT+ + G D E V+ K+NK E P N+L+ +H
Sbjct: 138 NITIKAVGGSDYEMGVEVTKVNKGELLFIDNP-NYNKLIGEH 178
>SB_50178| Best HMM Match : F5_F8_type_C (HMM E-Value=0.6)
Length = 497
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 37 WIHELSVGMFTDHQPLLRRQQTSDPPHQRSRKVQGLQQRHREAFIYESGE 186
+I+ V DH PL + ++ DP H+R+R + L+ E Y +G+
Sbjct: 164 YIYGQHVTFRVDHNPLAQLKKMPDPTHRRARWLDKLETLDYE-ISYRTGK 212
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -2
Query: 345 LFSFSESTIGSKSYPSLEITVMLCPSTDNSIGQFRNSALITRNRY---LCPCSTLNLA 181
+++ T G+K P++ +ML + +N R + L+ R+RY L CST N A
Sbjct: 1092 VYALQRVTFGAKPSPNMASYMMLKIADENGEESPRAATLLKRDRYMDDLIFCSTANEA 1149
>SB_39407| Best HMM Match : TIG (HMM E-Value=0)
Length = 1710
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +2
Query: 251 PIELSVDGHNITVISSDGYDLEPIVDSLKLNKSEFCITK 367
P+E S+ G + I +G+D P ++++ + +C+TK
Sbjct: 1389 PVEGSLGGGTVVTIKGNGFDARPGHTTVRIG-TGYCVTK 1426
>SB_25850| Best HMM Match : XylR_N (HMM E-Value=9.8)
Length = 203
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 310 FGAYRRFTKAKQVGVLHYEGAME 378
FG++RRF +QVG+ H EG +
Sbjct: 32 FGSHRRFILVQQVGLDHTEGLFQ 54
>SB_21302| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-27)
Length = 1290
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 278 NITVISSDGYDLEPIVDSLKLNKSEFCITKEPWKSNRLVTQH 403
NIT+ + G D E V+ K+NK E P N L+ +H
Sbjct: 443 NITIKAVGGSDYEMGVEVTKVNKGELLFIDNP-NYNNLIGEH 483
>SB_19820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 27.5 bits (58), Expect = 6.1
Identities = 24/67 (35%), Positives = 28/67 (41%)
Frame = +1
Query: 250 PYRVVCGRTQHNCYLE*WIRFGAYRRFTKAKQVGVLHYEGAMEVEPAGDPTWEELHNEGL 429
P V C Q E I FGA+ T AK + LHY A GD E L N+G
Sbjct: 87 PLHVACLNGQDIVISE-LISFGAHVNATNAKGMTPLHYTAA---SGHGDLCLELLLNDGA 142
Query: 430 QLNALNK 450
N +K
Sbjct: 143 SPNLQDK 149
>SB_1223| Best HMM Match : HEAT (HMM E-Value=0.0012)
Length = 467
Score = 27.5 bits (58), Expect = 6.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 274 SVHRQLYRAVQELSVDHAKPV 212
S+H+ +Y+AV+ VD A PV
Sbjct: 174 SIHKDVYKAVRNAMVDRAMPV 194
>SB_31322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 61 MFTDHQPLLRRQQTSDPPHQRSRKVQGLQQRHREAFIYESGEVQCRTGT 207
+F +P+ +R+ T + Q+ R V+ +Q+ E + GEV+C+T T
Sbjct: 349 LFATDKPM-QRETTKNADFQQWR-VEARKQKSPERYQRPDGEVECKTTT 395
>SB_4555| Best HMM Match : 7tm_1 (HMM E-Value=0.00038)
Length = 349
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -1
Query: 427 ILHYAAPPMLGHQPVRLP--WLLRNAKLRLV 341
+LH++ PP+LG P +P W LR+ RLV
Sbjct: 314 LLHFSRPPLLG-TPGSVPERWRLRSGLRRLV 343
>SB_3910| Best HMM Match : XylR_N (HMM E-Value=9.8)
Length = 253
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 310 FGAYRRFTKAKQVGVLHYEGAME 378
FG++R F +QVGV H EG +
Sbjct: 55 FGSHRGFISVQQVGVDHTEGLFQ 77
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,773,938
Number of Sequences: 59808
Number of extensions: 327672
Number of successful extensions: 1150
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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