Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0251
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54271-3|CAA91039.1|  713|Caenorhabditis elegans Hypothetical pr...    35   0.035
AL132898-1|CAC14405.1|  357|Caenorhabditis elegans Hypothetical ...    27   5.3  
AF016662-3|AAB66057.1|  461|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF003389-1|AAC71138.2|  865|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z54271-3|CAA91039.1|  713|Caenorhabditis elegans Hypothetical
           protein F21D5.3 protein.
          Length = 713

 Score = 34.7 bits (76), Expect = 0.035
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 161 KPLYMKAARFNVEQGHRYRFRVINAEFLNCPIELSVDGHNITVISSDGYDLEPI-VDSL 334
           +P  +   RF ++      FR++N       + L V+GH +TV+++DG ++ P+ VD L
Sbjct: 279 QPFNLPLERFQIKPNEDILFRIVNGGVAQ-ELMLYVEGHPMTVVAADGDEVVPMKVDRL 336


>AL132898-1|CAC14405.1|  357|Caenorhabditis elegans Hypothetical
           protein Y59A8B.2 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 68  RTTSHSSGDNKPPTLLINGVGRFRVFNNDTEK---PLYMKAARFNV 196
           R ++ +S   +PP ++I  + RF +FN D EK    +  + ARF+V
Sbjct: 239 RASTRTSKLWQPPPVMIIHLKRFALFNGDFEKNTAAVTFETARFDV 284


>AF016662-3|AAB66057.1|  461|Caenorhabditis elegans Hypothetical
           protein C33C12.5 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 411 LLPCWVTSRFDFHGSFVMQNSDLFSFSES 325
           LL C     F  H S ++QN+D F F+ES
Sbjct: 312 LLKCLSFGPFPRHQSILIQNADKFIFNES 340


>Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical
           protein F53H2.1 protein.
          Length = 914

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 38  GSTSSQLGCLRTTSHSSGDNKPPTL 112
           GS+   +GCL  T HS+ D+   TL
Sbjct: 546 GSSLESIGCLTDTRHSTNDDMVDTL 570


>AF003389-1|AAC71138.2|  865|Caenorhabditis elegans Hypothetical
           protein F23H11.2 protein.
          Length = 865

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 113 GGSEVCCRRRSGWWSVNIPTESSWIQSVTI 24
           G  +V CRRR   +   IPTE S+  + T+
Sbjct: 560 GAPQVSCRRRQAGFQKCIPTEMSFNSTSTL 589


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,479,336
Number of Sequences: 27780
Number of extensions: 241919
Number of successful extensions: 876
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)