Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0251
(481 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48100.1 68418.m05942 laccase family protein / diphenol oxida... 45 3e-05
At4g39830.1 68417.m05643 L-ascorbate oxidase, putative similar t... 44 4e-05
At5g21100.1 68418.m02513 L-ascorbate oxidase, putative similar t... 34 0.043
At5g48450.1 68418.m05991 multi-copper oxidase type I family prot... 34 0.057
At5g21105.1 68418.m02515 L-ascorbate oxidase, putative similar t... 33 0.100
At5g09360.1 68418.m01084 laccase family protein / diphenol oxida... 32 0.17
At1g76160.1 68414.m08844 multi-copper oxidase type I family prot... 32 0.17
At5g03260.1 68418.m00275 laccase, putative / diphenol oxidase, p... 32 0.23
At5g01050.1 68418.m00008 laccase family protein / diphenol oxida... 32 0.23
At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase, p... 31 0.40
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 31 0.40
At3g03450.1 68416.m00343 gibberellin response modulator, putativ... 31 0.40
At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase, p... 30 0.93
At1g41830.1 68414.m04829 multi-copper oxidase type I family prot... 30 0.93
At4g31570.1 68417.m04483 expressed protein 29 1.2
At1g21860.1 68414.m02736 multi-copper oxidase type I family prot... 29 1.2
At4g39160.1 68417.m05546 myb family transcription factor contain... 29 2.1
At1g65080.1 68414.m07378 OXA1 family protein contains Pfam PF020... 28 2.8
At5g19270.1 68418.m02295 hypothetical protein 28 3.7
At4g37160.1 68417.m05261 multi-copper oxidase type I family prot... 27 5.0
At3g22790.1 68416.m02873 kinase interacting family protein simil... 27 5.0
At3g19380.1 68416.m02458 U-box domain-containing protein contain... 27 5.0
At3g09040.1 68416.m01063 pentatricopeptide (PPR) repeat-containi... 27 5.0
At5g62710.1 68418.m07869 leucine-rich repeat family protein / pr... 27 6.5
At4g34250.1 68417.m04868 fatty acid elongase, putative similar t... 27 6.5
At2g40760.1 68415.m05028 rhodanese-like domain-containing protei... 27 6.5
At1g48730.1 68414.m05453 expressed protein 27 6.5
At1g17850.1 68414.m02209 expressed protein 27 6.5
At5g18860.1 68418.m02241 inosine-uridine preferring nucleoside h... 27 8.7
At1g21850.1 68414.m02735 multi-copper oxidase type I family prot... 27 8.7
>At5g48100.1 68418.m05942 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661197]
Length = 565
Score = 44.8 bits (101), Expect = 3e-05
Identities = 18/43 (41%), Positives = 32/43 (74%)
Frame = +2
Query: 194 VEQGHRYRFRVINAEFLNCPIELSVDGHNITVISSDGYDLEPI 322
VE+G YR R++NA +N P+ ++ H++TV+S+DG+ ++PI
Sbjct: 209 VEKGKTYRIRMVNAA-MNLPLFFAIANHSLTVVSADGHYIKPI 250
>At4g39830.1 68417.m05643 L-ascorbate oxidase, putative similar to
SP|P14133 L-ascorbate oxidase precursor (EC 1.10.3.3)
(Ascorbase) {Cucumis sativus}; contains Pfam profile
PF00394: Multicopper oxidase
Length = 582
Score = 44.4 bits (100), Expect = 4e-05
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Frame = +2
Query: 98 KPPTLLINGVGRFRVFNNDTEKPLYMKA---------ARF--NVEQGHRYRFRVINAEFL 244
+P +L+I G GRF NN T P + +RF V G YR R+ + L
Sbjct: 198 EPQSLMIQGRGRFNCSNNLTTPPSLVSGVCNVSNADCSRFILTVIPGKTYRLRIGSLTAL 257
Query: 245 NCPIELSVDGHNITVISSDGYDLEP 319
+ + ++GHN+TV+ +DG+ +EP
Sbjct: 258 SA-LSFQIEGHNLTVVEADGHYVEP 281
>At5g21100.1 68418.m02513 L-ascorbate oxidase, putative similar to
L-ascorbate oxidase [Precursor] SP:Q40588 from
[Nicotiana tabacum]
Length = 573
Score = 34.3 bits (75), Expect = 0.043
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Frame = +2
Query: 98 KPPTLLINGVGRFRV-----FNNDTEKPL-------YMKAARFNVEQGHRYRFRVINAEF 241
+P +LLING G+F FN EK + VE YR R+ +
Sbjct: 183 EPQSLLINGRGQFNCSQAAYFNKGGEKDVCTFKENDQCAPQTLRVEPNRVYRLRIASTTA 242
Query: 242 LNCPIELSVDGHNITVISSDGYDLEP 319
L + L+V GH + V+ +DG + P
Sbjct: 243 L-ASLNLAVQGHQLVVVEADGNYVAP 267
>At5g48450.1 68418.m05991 multi-copper oxidase type I family protein
contains Pfam profile: PF00394 Multicopper oxidase; also
similar to l-ascorbate oxidase and pollen-specific
protein
Length = 550
Score = 33.9 bits (74), Expect = 0.057
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Frame = +2
Query: 65 LRTTSHSSGDNKPPT-LLINGVGRFRVFNNDTEKPLYMKAARFNVEQGHRYRFRVINAEF 241
LR S +PP ++ING G F P NVE G YRFRV N+
Sbjct: 177 LRKDVESKNGLRPPDGIVINGFGPFA----SNGSPF----GTINVEPGRTYRFRVHNSG- 227
Query: 242 LNCPIELSVDGHNITVISSDG-YDLEPIVDSLKLNKSE---FCITKEPWKSN 385
+ + + HN+ ++ ++G Y ++ ++ ++ + F +T + SN
Sbjct: 228 IATSLNFRIQNHNLLLVETEGSYTIQQNYTNMDIHVGQSFSFLVTMDQSGSN 279
>At5g21105.1 68418.m02515 L-ascorbate oxidase, putative similar to
L-ascorbate oxidase from {Nicotiana tabacum} SP|Q40588,
{Cucurbita pepo var. melopepo} SP|P37064; contains Pfam
profile PF00394: Multicopper oxidase; supported by cDNA
gi_15215753_gb_AY050406.1_; A false intron was added
between exons 4 and 5 to circumvent the single
nucleotide insertion in this BAC which, otherwise,
causes a frameshift.
Length = 571
Score = 33.1 bits (72), Expect = 0.100
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Frame = +2
Query: 110 LLINGVGRFRV-----FNNDTEKPL--YMKAAR-----FNVEQGHRYRFRVINAEFLNCP 253
+LING G+F F+N+T P+ + + + +VE YR R+ + L
Sbjct: 187 ILINGRGQFNCSLAAQFSNNTSLPMCTFKEGDQCAPQILHVEPNKTYRIRLSSTTAL-AS 245
Query: 254 IELSVDGHNITVISSDGYDLEPI-VDSLKLNKSE 352
+ L+V GH + V+ +DG + P D + + E
Sbjct: 246 LNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGE 279
>At5g09360.1 68418.m01084 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201]
Length = 569
Score = 32.3 bits (70), Expect = 0.17
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +2
Query: 185 RFNVEQGHRYRFRVINAEFLNCPIELSVDGHNITVISSDGYDLE 316
+ V +G RY R+INA ++ + ++ H +TV++ DG+ L+
Sbjct: 221 KITVVRGRRYLLRIINA-VMDEELFFAIANHTLTVVAKDGFYLK 263
>At1g76160.1 68414.m08844 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 541
Score = 32.3 bits (70), Expect = 0.17
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 182 ARFNVEQGHRYRFRVINAEFLNCPIELSVDGHNITVISSDG-YDLEPIVDSLKLN 343
A NVEQG YRFR+ N L + + H + V+ +G + L+ SL ++
Sbjct: 201 ATLNVEQGKTYRFRISNVG-LQDSLNFRIQDHKMKVVEVEGTHTLQTTFSSLDVH 254
>At5g03260.1 68418.m00275 laccase, putative / diphenol oxidase,
putative similar to laccase [Pinus taeda][GI:13661207]
Length = 557
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 197 EQGHRYRFRVINAEFLNCPIELSVDGHNITVISSDGYDLEP 319
E G Y R+INA LN + + GHN+TV+ D +P
Sbjct: 214 EAGKTYLLRIINAA-LNDELFFGIAGHNMTVVEIDAVYTKP 253
>At5g01050.1 68418.m00008 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 586
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 194 VEQGHRYRFRVINAEFLNCPIELSVDGHNITVISSDGYDLEPIVDSLKL 340
V QG Y R+INA LN + + HN+TV++ D P + + +
Sbjct: 209 VVQGKTYLLRIINAA-LNTHLFFKIANHNVTVVAVDAVYTTPYLTDVMI 256
>At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase,
putative similar to laccase [Populus balsamifera subsp.
trichocarpa][GI:3805960]
Length = 565
Score = 31.1 bits (67), Expect = 0.40
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 194 VEQGHRYRFRVINAEFLNCPIELSVDGHNITVISSDGYDLEP 319
+ G RVINA LN P+ +V H +TV+ +D L+P
Sbjct: 214 INSGETSLLRVINAA-LNQPLFFTVANHKLTVVGADASYLKP 254
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 31.1 bits (67), Expect = 0.40
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 194 VEQGHRYRFRVINAEFLNCPIELSVDGHNITVISSDGYDLEPIVDSLKL 340
V QG Y R++NA LN + + HN+TV++ D P + + +
Sbjct: 209 VVQGKTYLLRIVNAA-LNTHLFFKIANHNVTVVAVDAVYSTPYLTDVMI 256
>At3g03450.1 68416.m00343 gibberellin response modulator, putative /
gibberellin-responsive modulator, putative similar to
GAI (GI:2569938), RGA1 (GB:AAC67333) and RGA2
(GI:2339980) [Arabidopsis thaliana]; possible
involvement in nitrogen metabolism
Length = 547
Score = 31.1 bits (67), Expect = 0.40
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 101 PPTLLINGVGRFRVFNNDTEKPLYMKAARFNVEQGHRYRFRVINAEFLN 247
PP+ + G+G + N+D+ + L K A+F G + F+ + AE L+
Sbjct: 313 PPSFRLTGIGPPQTENSDSLQQLGWKLAQFAQNMGVEFEFKGLAAESLS 361
>At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase,
putative similar to laccase [Populus balsamifera subsp.
trichocarpa][GI:3805960]
Length = 580
Score = 29.9 bits (64), Expect = 0.93
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 194 VEQGHRYRFRVINAEFLNCPIELSVDGHNITVISSDGYDLEPIVDSL 334
+ G RVIN+ LN P+ +V H +TV+ +D L+P ++
Sbjct: 216 INVGETILLRVINSA-LNQPLFFTVANHKLTVVGADASYLKPFTTNV 261
>At1g41830.1 68414.m04829 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 542
Score = 29.9 bits (64), Expect = 0.93
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 182 ARFNVEQGHRYRFRVINAEFLNCPIELSVDGHNITVISSDG-YDLEPIVDSLKLN 343
A NVEQG YR R+ N L + + H + ++ +G + L+ + SL ++
Sbjct: 202 ATLNVEQGKTYRLRISNVG-LQDSLNFRIQNHRMKLVEVEGTHTLQTMFSSLDVH 255
>At4g31570.1 68417.m04483 expressed protein
Length = 2712
Score = 29.5 bits (63), Expect = 1.2
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Frame = +2
Query: 110 LLINGVGRFRVFN--NDTEKPLYMKAARFNVE-QGHRYRFRVINAEFLNCPIELSVDGHN 280
LL+N FN ND + NVE H+ V+ A+ + + H
Sbjct: 930 LLLNARKAGIQFNQLNDDRTSTNQRLEELNVEFASHQDHINVLEADTIESKVSFEALKHY 989
Query: 281 ITVISSDGYDLEPIVDSLKLNKSEFCI 361
+ +DLE + DSLKL +
Sbjct: 990 SYELQHKNHDLELLCDSLKLRNDNISV 1016
>At1g21860.1 68414.m02736 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 538
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 182 ARFNVEQGHRYRFRVINAEFLNCPIELSVDGHNITVISSDG-YDLEPIVDSLKLN 343
A N+E G YR R+ N N + + H + ++ +G Y ++ + SL ++
Sbjct: 202 ATLNIEPGKTYRLRISNVGLQN-SLNFRIQNHTMKLVEVEGRYTIQNLFSSLDVH 255
>At4g39160.1 68417.m05546 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 545
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 166 RLLGVVVEDPEPSYSVDEEG 107
RLL VVE+PEP YS + G
Sbjct: 139 RLLETVVEEPEPHYSAGDTG 158
>At1g65080.1 68414.m07378 OXA1 family protein contains Pfam PF02096:
60Kd inner membrane protein; similar to AtOXA1
(GI:6624207) [Arabidopsis thaliana]
Length = 525
Score = 28.3 bits (60), Expect = 2.8
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 316 AYRRFTKAKQVGVLHYEGAMEVEPAGDPTWEELHNEGLQL--NALNKGEEEDETISV 480
AY + K K G++H E ++ GDP +E + E L L +AL K + DE +
Sbjct: 434 AYVQQGKLKS-GIIHLERVAKLREPGDPKSKEHYFEALLLLSSALYKEGQSDEAAKI 489
>At5g19270.1 68418.m02295 hypothetical protein
Length = 365
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +1
Query: 319 YRRFTKAKQVGVLHYEGAMEVEPAGDPTW--EELHNE 423
Y RF + Q G + + + +P G P W HNE
Sbjct: 303 YNRFRREPQGGPVRFHNGLLNKPQGGPAWLYNRFHNE 339
>At4g37160.1 68417.m05261 multi-copper oxidase type I family protein
contains Pfam profile: PF00394 Multicopper oxidase
Length = 541
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 176 KAARFNVEQGHRYRFRVINAEFLNCPIELSVDGHNITVISSDG-YDLEPIVDSLKLN 343
K F +QG Y+FRV N + I + H +++I +G + L+ +SL ++
Sbjct: 203 KGLIFTGQQGKTYKFRVSNVG-IATSINFRIQNHTMSLIEVEGAHTLQESYESLDVH 258
>At3g22790.1 68416.m02873 kinase interacting family protein
similar to kinase interacting protein 1 (GI:13936326)
[Petunia integrifolia]
Length = 1694
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 92 RRRSGWWSVNIPTESSWIQ 36
R S WW +IP S WIQ
Sbjct: 11 RLYSWWWDSHIPKNSKWIQ 29
>At3g19380.1 68416.m02458 U-box domain-containing protein contains
similarity to immediate-early fungal elicitor protein
CMPG1 GI:14582200 [Petroselinum crispum]; contains Pfam
profile PF04564: U-box domain
Length = 421
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 248 CPIELSVDGHNITVISSDGYDLEPIVDSLKLNKSEFC-ITKEPWKSNRLVTQH 403
CPI L + +TV + YD I + + + C +T+ P L+ H
Sbjct: 20 CPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDFTLIPNH 72
>At3g09040.1 68416.m01063 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 1028
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -1
Query: 283 YVVSVHRQLYRAVQELSVDHAKPV-SMSLFDIEPRRFHI*RLLGVVVEDPEPSYSVDEEG 107
+V+ H Q+++ + E+ + K S +FD P+R + +G V +D EG
Sbjct: 36 HVLPSHDQIHQRLLEICLGQCKLFKSRKVFDEMPQRLALALRIGKAVHSKSLILGIDSEG 95
Query: 106 R 104
R
Sbjct: 96 R 96
>At5g62710.1 68418.m07869 leucine-rich repeat family protein /
protein kinase family protein contains protein kinase
domain, Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 604
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 445 SARSIAILHYAAPPMLGHQPVRLPWLLRNAKL 350
SAR +A LH+ P + H+ ++ +L N KL
Sbjct: 419 SARGLAYLHHDCSPKIVHRDIKSSNILLNDKL 450
>At4g34250.1 68417.m04868 fatty acid elongase, putative similar to
fatty acid elongase 1 (Fae1), Arabidopsis thaliana,
U29142 [GI:881615]
Length = 493
Score = 27.1 bits (57), Expect = 6.5
Identities = 25/92 (27%), Positives = 39/92 (42%)
Frame = -2
Query: 300 SLEITVMLCPSTDNSIGQFRNSALITRNRYLCPCSTLNLAAFIYKGFSVSLLKTLNLPTP 121
SL + M C + +I ++ + RN Y ST N+ +Y G + S+L T
Sbjct: 213 SLNLGGMGCSAGVIAIDAAKSLLQVHRNTYALVVSTENITQNLYMGNNKSMLVT----NC 268
Query: 120 LMRRVGGLLSPEEWLVVRKHPN*ELVDPIRYY 25
L R G + + RK ELV +R +
Sbjct: 269 LFRIGGAAILLSNRSIDRKRAKYELVHTVRVH 300
>At2g40760.1 68415.m05028 rhodanese-like domain-containing protein
contains rhodanese-like domain PF00581
Length = 474
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 141 TLNLPTPL-MRRVGGLLSPEEWLVVRKHPN*ELVDPIRYYHPR 16
TL +P+ + RVG +SPEEW + P ++D Y R
Sbjct: 219 TLGIPSVSPIERVGTYVSPEEWNELISDPETVVIDVRNTYETR 261
>At1g48730.1 68414.m05453 expressed protein
Length = 191
Score = 27.1 bits (57), Expect = 6.5
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 403 WEELHNEGLQLNALNKGEEE 462
W++L NEG+ +N++ K EE+
Sbjct: 28 WQKLTNEGVVINSMGKPEEK 47
>At1g17850.1 68414.m02209 expressed protein
Length = 423
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 311 LEPIVDSLKLNKSEFCITKEPWKSNRLVTQHGRS 412
L P++ +K + C PW S+++ T H +S
Sbjct: 389 LRPVLHGVKRYEKWHCFVGLPWASDQMRTAHSKS 422
>At5g18860.1 68418.m02241 inosine-uridine preferring nucleoside
hydrolase family protein contains Pfam profile PF01156:
Inosine-uridine preferring nucleoside hydrolase
Length = 890
Score = 26.6 bits (56), Expect = 8.7
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 212 YRFRVINAEFLNCPIELSVDGHNITVISS-DGYDLEPIVDSLKLNKSEF 355
+ F ++ N P LS H I V + D DL I+ LKLNKSEF
Sbjct: 12 FLFTILGLLGQNLPCVLS-SSHRILVDTDVDTDDLFAILYLLKLNKSEF 59
>At1g21850.1 68414.m02735 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +2
Query: 182 ARFNVEQGHRYRFRVINAEFLNCPIELSVDGHNITVISSDG 304
A N+E G YR R+ N N + + H + ++ +G
Sbjct: 202 ATLNIEPGKTYRLRISNVGLQN-SLNFRIQNHKMKLVEVEG 241
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,998,066
Number of Sequences: 28952
Number of extensions: 228179
Number of successful extensions: 767
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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