Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0250
         (554 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   0.90 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.4  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 411 TTKLQLSKNVICAHCKGVGGK 473
           +T L+L    I  HC+ VGGK
Sbjct: 35  STILRLDPKFIALHCQEVGGK 55


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -3

Query: 321 YSHPFQRGYQRNYQKFHQPETLLLGRLPV 235
           Y++ +   Y  NY+K ++   + + ++PV
Sbjct: 101 YNNNYNNNYNNNYKKLYKNYIINIEQIPV 129


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -3

Query: 321 YSHPFQRGYQRNYQKFHQPETLLLGRLPV 235
           Y++ +   Y  NY+K ++   + + ++PV
Sbjct: 101 YNNNYNNNYNNNYKKLYKNYIINIEQIPV 129


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 402 HTNLLMSLQGDAWYLRHGL 346
           +TN+++S  G+  +L HG+
Sbjct: 108 NTNVIVSHTGEVVWLSHGI 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,584
Number of Sequences: 438
Number of extensions: 3687
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)