Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0249
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              35   8e-04
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 34.7 bits (76), Expect = 8e-04
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
 Frame = +3

Query: 252 KQYEVT--FNKFDEGRDGFLDLTEVKRMMERLGAPQTHLG--LKAMISEVDEDGDNKISF 419
           K+Y V+  F+ +D   +G L+  E+++  E     +   G  L  MIS  D DGD K++ 
Sbjct: 234 KEYLVSIMFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDTDGDGKLNV 293

Query: 420 REFLLIYRK 446
            EF + + K
Sbjct: 294 NEFYMAFSK 302


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -2

Query: 473 IHFQFTSTCFSVDEEKLSKTNLVITIFIDLRD 378
           +H     T +   + +  +++L +TI +D+RD
Sbjct: 157 LHDNKLITMYRFPQNQFKESSLFVTIAVDVRD 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,727
Number of Sequences: 438
Number of extensions: 3298
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)