Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0248
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   2.7  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    26   3.6  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.8  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   8.3  

>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 552 HFIFTSVDVTNRLII*IPKSIECLQTL 472
           H IF  +D+ N +   IP+SI  +Q L
Sbjct: 370 HIIFFDLDLLNNISFPIPRSINAIQQL 396


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 387 QKTTRGLTIYVKFILEQMFVQHTKLVLV 304
           Q TT+GL+     +LE++F ++T+ +L+
Sbjct: 153 QLTTKGLSKLTYKVLEKLFPENTQFILI 180


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 160 CHTFRNLSDILRVHDAALLNIRNI 231
           CH  +NL  IL+ HD A+ ++  +
Sbjct: 234 CHAIKNLPKILKKHDNAVRSLEAV 257


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 496 LRYLNYQTVRYINAGKYKMYKLQHHKILV 582
           +RYL ++T  Y+ +  + +  L+H+K L+
Sbjct: 335 IRYLAFETTAYLISCGHSITSLKHYKELI 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,236
Number of Sequences: 5004
Number of extensions: 48843
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)