Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0248
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)               29   2.8  
SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.9  
SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)
          Length = 279

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -2

Query: 441 LDNWLSQTT---QSEYMTVTWQKTTRGLTIYVKFILEQMFVQHTKLVLVPT 298
           L+ +L++ T   +   MT+ ++KT+  L  YV + LE  F  HT L   P+
Sbjct: 167 LEYYLAKATIDYKESEMTIDYKKTSTYLRKYVYYFLEISFQDHTFLSFSPS 217


>SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 301 RNKNQFCVLYEHLFKNKFYVNCEPTGCFLPR 393
           RN N+  +L+E LF   +YV+    GC LPR
Sbjct: 93  RNVNKE-ILFEWLFSYAYYVDYCTRGCLLPR 122


>SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -2

Query: 393 TWQKTTRGLTIYVKFILEQM--FVQHTKLVLVPTWSHC*SHDSIRIYRTF 250
           +W +T++G+ +++   + Q+  F  HTK+++ P        D  + +RTF
Sbjct: 531 SWFRTSKGIILHLSNGILQINFFKDHTKIIMCPRMGAVTYIDENKRFRTF 580


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,829,977
Number of Sequences: 59808
Number of extensions: 350724
Number of successful extensions: 551
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)