Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0247
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    28   1.2  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    25   6.4  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   6.4  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   6.4  
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ...    25   8.5  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   8.5  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    25   8.5  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +2

Query: 437 RLYNNLEPNSPLRYHVYYHVIELAARV 517
           RLY+ +   + +R++V Y+V+E+A R+
Sbjct: 246 RLYHIIRAQASIRFYVLYNVLEIADRL 272


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 136 VHKHSWPLHFNSFFELYSSIYYL 68
           +H H+ PL   +FF+ YSS  +L
Sbjct: 352 LHYHNKPLEHKAFFQKYSSKRFL 374


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 574 VSKLFPKLLNPSEDFPDKSNSCSQFYDMIIY 482
           + KLF   LN S D PD +    QFY++  Y
Sbjct: 656 MGKLFQVELNFSYDSPDVNLLIEQFYEITSY 686


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 89  QFKKGIKMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDD 235
           +  +GIK +G ++  +I+ +DQA     YF S   E  E  +    E D
Sbjct: 461 RISEGIKEEGISLSEEITDKDQAFASMGYFDSYNFEGVENSNSLNNEGD 509


>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = +2

Query: 161 ELRRYFKSLG-AEISEEKSPKG-----IEDDLHKIVGVCDACFKEPSESDIEAILNS 313
           EL  Y   L   +IS +K+P+      +E+DL +++ + +   +E  E+D     NS
Sbjct: 4   ELEEYKSQLALVQISLQKTPQNEELQLLENDLKELISLTENLLQESVENDKNTFQNS 60


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 121 SCVYGHIPGRSGTRTEKIF*EPWRRDFRR 207
           S VYG +PG    + E++  E W   FR+
Sbjct: 636 SDVYGKVPGALNIKPEQMTPEVWDHVFRQ 664


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +2

Query: 137 ISLEDQALELRRYFKSLGAEISEEKSPKGI--EDDLHKIVGVCDACFKEPSESDIEAIL 307
           I+L D      +     G ++       G+  + DLH I+G    C  E + SD+ A L
Sbjct: 230 ITLSDGTKRPCKIMLLAGGDLIASMGEPGVWSDKDLHHILGKFGCCIVERTGSDVWAFL 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,745
Number of Sequences: 5004
Number of extensions: 44805
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)