Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0247
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   1e-11
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)                    28   5.0  
SB_59428| Best HMM Match : Ank (HMM E-Value=2.2)                       28   6.6  
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_28895| Best HMM Match : p450 (HMM E-Value=0)                        27   8.8  

>SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 858

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 42/139 (30%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
 Frame = +2

Query: 152 QALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAILNSIVSIMV 331
           +A E+R + K  GA++ EE S   ++D+L +I+  C  CFKE  ++++E+++NSI+S+++
Sbjct: 49  KAQEIRTFLKEQGADLKEE-SITPLQDELAEILECCQVCFKE--DAELESVMNSILSLVL 105

Query: 332 SIPLERGENLILAFSQRLTKAPGPKLGMVA---LQSLWRLYNNLEPNSPLRYHVYYHVIE 502
            +P +R E LI     +L           A   L+ L  L++ L    P+R+ VY   + 
Sbjct: 106 VVPEKRNE-LIKKCCDKLKANMSEDENSSAAARLRVLSVLFSGLPEKDPMRHEVYCTQLT 164

Query: 503 LAARVGFVREVFTGVEQLR 559
           +AA+   V ++ T +E ++
Sbjct: 165 IAAKASLVDDIPTELELVK 183


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +2

Query: 143  LEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAILNSIVS 322
            L+D   ELR    SLGA +        +E  L ++ G+C+    E  +   E + N  V 
Sbjct: 2972 LDDMITELRNAEISLGASLMGTPDLDQLESQLEEVKGLCED--MEGKQELFENLKNKGVD 3029

Query: 323  IMVSIPLE 346
            +M  IP E
Sbjct: 3030 MMEKIPEE 3037


>SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 340 WYRNHNRDNTVQNGFDVRFTRLFETSITNPNDLMQII-LNAL 218
           WY    R N V+NGFD+     +  ++T+P     ++ LN++
Sbjct: 72  WY-GRRRQNCVRNGFDITVLTRYSEAVTHPRTYRALLSLNSV 112


>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
          Length = 1719

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +2

Query: 269  FKEPSESDIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLWRLYN 448
            FKE  ++ I ++   IV + V +  E+G  L     + +            + S  RL+ 
Sbjct: 1307 FKESGKASIPSVNREIVRVWVDLCSEKGVPLEREAEEMIRLLDESLKHRSRIDSTMRLWM 1366

Query: 449  NLEPNSPLRYHV 484
             + P+ P+  HV
Sbjct: 1367 KIAPHVPVEIHV 1378


>SB_59428| Best HMM Match : Ank (HMM E-Value=2.2)
          Length = 351

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 458 PNSPLRYHVYYHVIE 502
           P+ PL YH +YHVI+
Sbjct: 288 PDDPLDYHFFYHVID 302


>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 331 NHNR-DNTVQNGFDVRFTRLFETSITNPND 245
           NHNR +N  +   D+R TR  + ++ NP D
Sbjct: 613 NHNRAENNEEKKLDLRSTRELQGAVLNPRD 642


>SB_28895| Best HMM Match : p450 (HMM E-Value=0)
          Length = 492

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 164 LRRYFKSLGAEISEEKSPKGIEDDLHKIVGV 256
           LR+YF SLG  I++E +   +ED L+  VGV
Sbjct: 134 LRKYFPSLGDTIAKELAK--LEDKLNSDVGV 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,519,129
Number of Sequences: 59808
Number of extensions: 329278
Number of successful extensions: 850
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)