Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0247
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li...    30   1.3  
At1g76850.1 68414.m08943 expressed protein                             29   2.4  
At2g31890.1 68415.m03896 expressed protein                             29   3.1  
At1g72910.1 68414.m08433 disease resistance protein (TIR-NBS cla...    28   4.1  
At5g07280.1 68418.m00830 leucine-rich repeat protein kinase, put...    28   5.4  
At4g33070.1 68417.m04711 pyruvate decarboxylase, putative strong...    28   5.4  
At1g29150.1 68414.m03567 26S proteasome regulatory subunit, puta...    27   7.2  
At5g51050.1 68418.m06328 mitochondrial substrate carrier family ...    27   9.5  
At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger) fa...    27   9.5  

>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
           light-insensitive protein, putative similar to ULI3
           (UV-B light insensitive) [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +3

Query: 111 CKGQLCLW--TYPWKIRHSN*EDIL 179
           C   LCLW  + P KIRHSN E IL
Sbjct: 519 CDFNLCLWCASLPKKIRHSNDEHIL 543


>At1g76850.1 68414.m08943 expressed protein
          Length = 1090

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +2

Query: 305 LNSIVSIMVSIPLERGENLILAFSQRLTKA-PGPKLGMVALQSLWRLYNNLEPNSPLRYH 481
           L S V+I+  + LE  E ++L F   L K+   PK+   +L++  RL   LEP S   +H
Sbjct: 380 LPSHVNILKRV-LEEVEKVMLEFKGTLYKSMEDPKIDFTSLENTVRLLLELEPESDPVWH 438


>At2g31890.1 68415.m03896 expressed protein
          Length = 671

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
 Frame = +2

Query: 128 FMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAIL 307
           F D  +ED+  +LR+   SL   + EEK  K  E    ++     + F  PS+   E  L
Sbjct: 198 FEDGFVEDKMGDLRKRVSSLAGGMFEEKKEKMKEQLAQRL-----SQFSGPSDRMKEINL 252

Query: 308 N-SIVSIMVSIP-LERGENLILAFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSPLR 475
           N +I+    +   LE     I+A ++ L+ +P   L +    +L R+  N+E  S +R
Sbjct: 253 NKAIIEAQTAEEVLEVTAETIMAVAKGLSPSPLSPLNIAT--ALHRIAKNMEKVSMMR 308


>At1g72910.1 68414.m08433 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = -3

Query: 408 SLGPGALVSL*LNAKIRFSPLSNGIETIIETILFRMASMSDSLGSLKQASQTPTILCRSS 229
           S GPG++V +  + K   +  S GI  + E    +   +  SLG  K+A+     LCR+ 
Sbjct: 299 SFGPGSVVIITTDNKGLLN--SYGITDVYEVEHLKFCGILRSLGFKKRAAAFQRALCRAK 356

Query: 228 SMPLGDFSSEISA 190
           S     F  + S+
Sbjct: 357 SFATECFCCQSSS 369


>At5g07280.1 68418.m00830 leucine-rich repeat protein kinase,
           putative / extra sporogenous cells (ESP) identical to
           extra sporogenous cells [Arabidopsis thaliana]
           gi|23304947|emb|CAD42912; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1192

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = +2

Query: 335 IPLERGE-----NLILAFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSPLRYHVYYHVI 499
           IP+E G+      L L  +    + P     +  LQ L   YNNL  + P +   Y+H I
Sbjct: 512 IPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQI 571

Query: 500 EL 505
           E+
Sbjct: 572 EM 573


>At4g33070.1 68417.m04711 pyruvate decarboxylase, putative strong
           similarity to SP|P51846 Pyruvate decarboxylase isozyme 2
           (EC 4.1.1.1) (PDC) {Nicotiana tabacum}; contains
           InterPro entry IPR000399: Pyruvate decarboxylase
          Length = 607

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +2

Query: 302 ILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSPLRYH 481
           I N   S+  S+ L++ E  I+    R+T A GP  G + +   +R  +     +   Y 
Sbjct: 330 IFNDYSSVGYSLLLKK-EKAIVVQPDRITVANGPTFGCILMSDFFRELSKRVKRNETAYE 388

Query: 482 VYYHV 496
            Y+ +
Sbjct: 389 NYHRI 393


>At1g29150.1 68414.m03567 26S proteasome regulatory subunit,
           putative (RPN6) similar to 19S proteosome subunit 9
           GB:AAC34120 GI:3450889 from [Arabidopsis thaliana]
          Length = 419

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/63 (22%), Positives = 24/63 (38%)
 Frame = +2

Query: 212 SPKGIEDDLHKIVGVCDACFKEPSESDIEAILNSIVSIMVSIPLERGENLILAFSQRLTK 391
           SP+ I      I  +CD   +E    D+  +L  +      IP  +   ++      + K
Sbjct: 36  SPEAIRIKEQAITNLCDRLTEEKRGEDLRKLLTKLRPFFSLIPKAKTAKIVRGIIDAVAK 95

Query: 392 APG 400
            PG
Sbjct: 96  IPG 98


>At5g51050.1 68418.m06328 mitochondrial substrate carrier family
           protein similar to peroxisomal Ca-dependent solute
           carrier [Oryctolagus cuniculus] GI:2352427; contains
           INTERPRO:IPR001993 Mitochondrial substrate carrier
           family, INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 487

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 143 LEDQALELRRYFKSLGAEISEEKSPKGIEDDLHK 244
           ++D+ LEL R F+++  E +   SP+G+ D L K
Sbjct: 101 MDDKELELYRIFQAIDVEHNGCISPEGLWDSLVK 134


>At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature
          Length = 408

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +1

Query: 418 SFAIVMETLQQLRTQLTSKIPCILS 492
           +FA++M+ +Q +R +LTS  P +++
Sbjct: 119 NFALLMDNVQHIRQRLTSSFPVLVT 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,348,276
Number of Sequences: 28952
Number of extensions: 232623
Number of successful extensions: 707
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)