Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0245
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    37   0.002
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    29   0.46 
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    27   1.9  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.3  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    26   3.3  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    26   4.3  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    26   4.3  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    25   5.7  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    25   7.5  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   10.0 
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   10.0 
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   10.0 
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    25   10.0 
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   10.0 
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    25   10.0 
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   10.0 

>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 437 SSDAHAVFQLPHYSSEHHAQCHPKLCNQCFFSHILLASQGLLVQ*SYIAYW 285
           S+D H +  +P YS+      H  + N C ++H      GLL +  YI  W
Sbjct: 200 SNDPHLISSVPDYSARPRKYAHVPILNLCLWNHAYYKDYGLLNRSRYIDTW 250


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 167 QTMQLAEMEGQMNHIAQTVA-IHKEKVARREIGVLTANKVTNRQYKIIAPANPE 325
           + + L +  G + H   T+  +H +K+A RE+   +A       Y+ +A A+P+
Sbjct: 808 RAVPLRDCTGSVLHFFGTMTDVHDQKLAERELQKQSAIAANENSYRSLAEASPQ 861


>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 473 LEPVEEPPREQSSSDAHAVFQLPHYSSEHHAQCHP 369
           L P++ PP ++S+     + +   Y+  H  Q HP
Sbjct: 22  LPPMDVPPEKRSTPRVSGIAKYLKYAQSHDQQYHP 56


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 357 SMLFLTYFIGFSGFAGAMILYCLLVTLFAVRTPISRRATFSLCMATVWAM 208
           +ML+L       G  G  I+  L+  + A  TP+  R  ++ CM   W +
Sbjct: 177 NMLWLVLCRAVQGIGGGGIM-SLVTIVIADITPLQTRPYYTGCMGVTWGV 225


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 198 WPSISANCMVCSSSSCRKLYAKVLIWYAT 112
           W SIS      S  SCRK Y K +  Y++
Sbjct: 436 WHSISKKLGTKSPESCRKQYEKTIASYSS 464


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +1

Query: 433 LELCSRGGSSTGSNNQASNATCGCQVLISCQHWNAWTWNI 552
           L L  RGG  +G  NQ      G Q L+  Q  NA  W +
Sbjct: 160 LSLLKRGGLMSGPKNQLRITRAGFQFLL--QDINAQIWTL 197


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 7/23 (30%), Positives = 17/23 (73%)
 Frame = +2

Query: 263 VLTANKVTNRQYKIIAPANPEKP 331
           ++T+N+V   Q+ +++  NP++P
Sbjct: 310 IVTSNQVNRLQHALVSAVNPQRP 332


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -2

Query: 357 SMLFLTYFIGFSGFAGAMILYCLLVTLFAVRTPISRRATFSLCMATVWAM 208
           +ML+L       G  G  I   L+  + A  TP+  R  ++ CM   W +
Sbjct: 177 NMLWLVLCRAVQGIGGGGIT-SLVTIVIADITPLQTRPYYTGCMGVTWGL 225


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +2

Query: 20  GITVRPIIFNPKINVSLWKGTKN--YTTQSLASVAYQI---NTLAYNFLQLLELQT 172
           G+TV  +  N K  VS WK + N     + +    Y++   N L    LQ + LQT
Sbjct: 80  GVTVSELSLNAKFVVSAWKPSFNDEEVYEFVGCTTYRLFDENNLLRQGLQKIPLQT 135


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 481 ASNATCGCQVLISCQHWNAWTW 546
           +S A  G   LI    W AW W
Sbjct: 207 SSLAAVGASFLIDSYFWGAWCW 228


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 59  NVSLWKGTKNYTTQSLASVAYQINTLAYN 145
           NV LW      +   L+   Y++++LAY+
Sbjct: 182 NVYLWSEISGPSIMELSPTTYEVSSLAYS 210


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 433 LELCSRGGSSTGSNNQASNATCGCQVL 513
           L  C  GG++  ++ QA  ++C C VL
Sbjct: 410 LRYCISGGAALAASTQAFLSSCICPVL 436


>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/16 (68%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -1

Query: 232 VYG-NRLGYVIHLAFH 188
           V+G NR GYVIH A H
Sbjct: 150 VFGINRAGYVIHSAIH 165


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 174 MVCSSSSCRKLYAKVLIWYATLANDW 97
           M+  +  CR L A+ L+  A+L ND+
Sbjct: 156 MISETKDCRSLIAEQLLQSASLLNDF 181


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 345 EKALITQLWMTLGMVL-TGVVGQLEHRVG-VARALLPGWLLYRLQQPSLQRHLRLSGP 512
           E  +++ LW     +L T  +  +++  G +  AL  G LL+R  + S  R L+L GP
Sbjct: 72  EPPILSSLWQLDSSLLETASIVSMKYSNGWLMLALSDGNLLFRHIESSKLRKLQLHGP 129


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +2

Query: 269 TANKVTNRQYKIIAPANPEKP---IKYVRKSIDYTALDDIG-HGAHWSSGATGTP 421
           T ++   R+Y++  PA  EKP         S+  T+ D +  HG+  S+  T  P
Sbjct: 473 TRSREWRRRYRVAPPAENEKPHTSRTNTASSLSSTSEDQVSTHGSISSAKVTAIP 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,022
Number of Sequences: 5004
Number of extensions: 52335
Number of successful extensions: 158
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)