Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0245
         (559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0640 - 4683970-4684481,4685197-4685343,4685606-4686764,468...    29   1.9  
09_06_0253 + 21871538-21871697,21871789-21872135                       29   2.5  
06_01_0396 - 2847739-2848332                                           28   4.4  
12_02_0946 + 24675334-24676338,24676537-24676757,24678253-246783...    28   5.8  
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138...    28   5.8  
12_02_0738 + 22669557-22669756,22669868-22669916,22670620-226706...    27   7.7  
12_01_0965 + 9688062-9688532                                           27   7.7  
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334...    27   7.7  

>03_01_0640 -
           4683970-4684481,4685197-4685343,4685606-4686764,
           4686851-4686907
          Length = 624

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = +2

Query: 260 GVLTANKVTNRQYKIIAPANPEKPIKYVRKSIDYTALDDIGHGAHWSSGATGTPRGRRSS 439
           G+L+  +  N+Q     P  P++  +  + S+   AL   G+G  WSS    TP  RR S
Sbjct: 535 GLLSRLEYLNKQ-----PVRPQRAREAAKDSVAKAAL---GNGG-WSSRRRPTPSSRRLS 585

Query: 440 SAPG 451
            +PG
Sbjct: 586 QSPG 589


>09_06_0253 + 21871538-21871697,21871789-21872135
          Length = 168

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 44  FNPKINVSLWKGTKNYTTQSLASVAYQINT 133
           +NP I+ SLW G + +    L S  YQ  T
Sbjct: 32  WNPNIDYSLWSGNQTFYVGDLISFRYQKGT 61


>06_01_0396 - 2847739-2848332
          Length = 197

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 357 SMLFLTY-FIGFSGFAGAMILYCLLVTLFAVRTPISRRATF 238
           S+ F+TY   G +  AGAM+L    V L A+   ++R   F
Sbjct: 41  SLFFVTYQLFGVAAAAGAMVLDVCAVALAALNVTVTRARRF 81


>12_02_0946 +
           24675334-24676338,24676537-24676757,24678253-24678307,
           24678446-24678571
          Length = 468

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/16 (56%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
 Frame = -1

Query: 313 WCNDLILPI-GDFICC 269
           W NDL+LP+ G ++CC
Sbjct: 242 WVNDLVLPLHGHYLCC 257


>07_03_1772 +
           29411874-29413218,29413355-29413421,29413749-29413896,
           29415293-29415416,29416340-29416590,29416923-29418449,
           29418786-29418896,29419576-29419734,29419827-29421734
          Length = 1879

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 233 KEKVARREIGVLTANKVTNRQYKIIAPANPEKPIKYVRKSIDY 361
           +E +A RE+GV TA  V  ++   +A A  ++ + +   S+D+
Sbjct: 103 QEALAMRELGVSTAVAVARKRSPPLAVAGNDRRLPFQDSSVDF 145


>12_02_0738 +
           22669557-22669756,22669868-22669916,22670620-22670657,
           22670977-22671058,22671146-22671195,22671381-22671847,
           22671992-22672155,22672242-22672448,22672554-22672710,
           22672858-22672965,22673161-22673234,22673364-22673521,
           22673728-22673788,22673858-22673965
          Length = 640

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 476 LLEPVEEPPREQSSSDAHAVFQLPHYSSEHHAQCHPKL 363
           +LE +E   +E+    +H V QL H  S  HA  HP L
Sbjct: 105 MLERMENM-QERMEDISHEVKQLKHLHSNRHADQHPGL 141


>12_01_0965 + 9688062-9688532
          Length = 156

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 503 QPQVALEAWLLEPVEEPPREQSSSDAHAVFQLPHYSSEHHAQCHPKLCNQ 354
           QP + L+  +L P  E  R+Q S+ A   FQ P +   +      + C Q
Sbjct: 34  QPHLMLQQQMLSPCGEFVRQQCSTVATPFFQSPVFQLRNCQVMQQQCCQQ 83


>09_04_0594 -
           18831011-18831360,18831562-18832111,18832364-18833406,
           18833496-18833760,18835194-18835340,18835431-18835511,
           18835626-18835804,18835935-18836093,18836269-18836398,
           18836935-18837094,18837337-18837419,18837865-18837915,
           18838035-18838151,18838273-18838359
          Length = 1133

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +2

Query: 164 LQTMQLAEMEGQMNHIAQTV----AIHKEKVARREIGVLTANKVTNR 292
           L  + +A++EG ++H+ Q V     I +E++  R  G+ T  K+  R
Sbjct: 304 LWKLNVADIEGTLSHVCQMVLQDSTIRREELRARAKGLKTLGKIFQR 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,696,014
Number of Sequences: 37544
Number of extensions: 353478
Number of successful extensions: 1225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)