Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0245
(559 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 142 2e-34
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30) 30 1.5
SB_10166| Best HMM Match : Alpha_GJ (HMM E-Value=7.3) 29 1.9
SB_6733| Best HMM Match : 7tm_1 (HMM E-Value=9.6e-36) 29 2.6
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_35957| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_19920| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_9968| Best HMM Match : COLFI (HMM E-Value=0.0027) 29 3.4
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17) 28 4.5
SB_22333| Best HMM Match : COLFI (HMM E-Value=0.0083) 28 5.9
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19) 27 7.9
SB_25395| Best HMM Match : CK_II_beta (HMM E-Value=0) 27 7.9
SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 142 bits (344), Expect = 2e-34
Identities = 75/122 (61%), Positives = 89/122 (72%)
Frame = +2
Query: 80 TKNYTTQSLASVAYQINTLAYNFLQLLELQTMQLAEMEGQMNHIAQTVAIHKEKVARREI 259
TK +TTQSLASVAYQIN+LA N L LL+ Q QL ME ++N+I++TV IHKEKVARREI
Sbjct: 98 TKQFTTQSLASVAYQINSLAVNMLNLLDQQVSQLQTMESKINYISETVNIHKEKVARREI 157
Query: 260 GVLTANKVTNRQYKIIAPANPEKPIKYVRKSIDYTALDDIGHGAHWSSGATGTPRGRRSS 439
GVL +K T+R +KIIAPA EKP +Y RK IDY+ LDDIGHG + P RR S
Sbjct: 158 GVLATSKNTSRTHKIIAPAKQEKPERYSRKPIDYSILDDIGHGVKIA------PTDRRRS 211
Query: 440 SA 445
SA
Sbjct: 212 SA 213
>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
Length = 3015
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -2
Query: 177 CMVCSSSSCRKLYAKVLIWYATLANDWVV*FFVPFQSETFIF-GLKIIGLTV 25
C V S S + L+W T+A W+ V F + F+ LKI L +
Sbjct: 2028 CFVVVSVSAAFTFMYSLVWQKTIAEQWLTSMLVSFTQDLFVIQPLKICILAI 2079
>SB_10166| Best HMM Match : Alpha_GJ (HMM E-Value=7.3)
Length = 199
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2
Query: 387 PCPMSSKAV*SMLFLTYFIGFSGFAGAMILYCLLVTL 277
P P S ML LTYFIG F G ++L C+L L
Sbjct: 81 PPPKGSWWSRKMLILTYFIG--AFLGLVLLSCILCVL 115
>SB_6733| Best HMM Match : 7tm_1 (HMM E-Value=9.6e-36)
Length = 398
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 352 AFSHIFYWLLRVCWCNDLILPIGDFICCKNSNLTTC 245
AF +FYW+ + CN + P +I C S C
Sbjct: 252 AFMRVFYWVWSISMCNSAVNP---YIYCARSISVAC 284
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 2 CRNSARGIT-VRPIIFNPKINVSLWKGTKNYTTQSLASVAYQI 127
C+ RG+T ++ +FN + ++ KGT ++L S+ ++I
Sbjct: 359 CKGLRRGVTDIQDYMFNVNVRINRLKGTSEDIIEALKSIHFKI 401
>SB_35957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +1
Query: 406 GNWNTAWASLE---LCSRGGSSTGSNNQASNATCGC 504
GNW W S + + S GG+ TGSN A T C
Sbjct: 110 GNWFNWWVSRDGHKMTSWGGAPTGSNKCACGVTGTC 145
>SB_19920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1035
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +1
Query: 406 GNWNTAWASLE---LCSRGGSSTGSNNQASNATCGC 504
GNW W S + + S GG+ TGSN A T C
Sbjct: 439 GNWFNWWVSRDGHKMTSWGGAPTGSNKCACGVTGTC 474
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 403 WGNWNTAWASLELCSRGGSSTGSNNQASNATCGC 504
W NW + ++ S GG+ TGSN A T C
Sbjct: 740 WYNWWVSRDGQKMTSWGGAPTGSNKCACGVTGTC 773
>SB_9968| Best HMM Match : COLFI (HMM E-Value=0.0027)
Length = 354
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +1
Query: 406 GNWNTAWASLE---LCSRGGSSTGSNNQASNATCGC 504
GNW W S + + S GG+ TGSN A T C
Sbjct: 263 GNWFNWWVSRDGHKMTSWGGAPTGSNKCACGVTGTC 298
>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2324
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 382 AWCSLE*WGNWNTAWASLELCSRGGSSTGSNNQASNA 492
+W LE W +WN WA E+ + G S QA+NA
Sbjct: 2207 SWNPLEVW-DWNHLWARAEMHAGGIPSEAPLVQAANA 2242
>SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)
Length = 722
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 388 CSLE*WGNWNTAWAS--LELCSRGGSSTGSNNQASNATCGCQVLISCQHWNAWTWNIRK 558
C ++ GN N + L L RG ++ +NN+ + C +++ C N+ ++RK
Sbjct: 582 CVIDNNGNCNHGGKNNDLNLHDRGSNNNNNNNKEGTSQPSCDLVVYCIQTNSIKRDVRK 640
>SB_22333| Best HMM Match : COLFI (HMM E-Value=0.0083)
Length = 339
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 403 WGNWNTAWASLELCSRGGSSTGSNNQASNATCGC 504
W NW + ++ S GG+ TGSN A T C
Sbjct: 168 WCNWWVSRDGQKMTSWGGAPTGSNKCACGMTGTC 201
>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
Length = 3083
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 177 CMVCSSSSCRKLYAKVLIWYATLANDWVV*FFVPFQSETFI 55
C+ S +S L+W A ++ W V FF+ F + F+
Sbjct: 2594 CIATSFASAVVTIMYSLMWKADISEKWCVSFFLSFIEDAFL 2634
>SB_25395| Best HMM Match : CK_II_beta (HMM E-Value=0)
Length = 408
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +2
Query: 35 PIIFNPKINVS-LWKGTKNYTTQSLASVAYQINTLAYNFLQLLELQTMQLAEMEGQMNHI 211
P+I NP + K QS +AY + Y+ + ++ +++ +H+
Sbjct: 208 PVIRNPFTAFDDVTSAMKRKMIQSTHPLAYSMEDRFYSVRKKRKVFSVKRFPKHPLPDHV 267
Query: 212 AQTVAIHKEKVARREIGV 265
AQ V K VAR++I V
Sbjct: 268 AQDVIARKTHVARKQIEV 285
>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = -2
Query: 318 FAGAMILYCLLVTLFAVRTPISRRATFSLCMATVWAM*FIWPSI 187
F +++ CL+ L ++ I + + T++A+ IW S+
Sbjct: 213 FVTTVLILCLVAALLSLHPRIGKAGVLQSAIVTLYAVYLIWSSL 256
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,793,550
Number of Sequences: 59808
Number of extensions: 384077
Number of successful extensions: 1215
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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