Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0244
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    47   1e-06
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    28   0.66 
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   4.7  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   4.7  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    25   6.1  
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    24   8.1  

>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 18/102 (17%), Positives = 51/102 (50%)
 Frame = +3

Query: 105 KVAQYL*EVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIADIISKQVG 284
           K++  +   +      L +  M  +     Y++ F W+ +++ + +++  I+D I+ ++ 
Sbjct: 76  KISDIIKNTVSSSSGDLKDYFMVQDKSPLEYVSSFAWNSSRFHMNKTISEISDRITSEII 135

Query: 285 QIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLGRSSQE 410
             + D++ + +++        N++KKQ+G+L  ++L     E
Sbjct: 136 SFENDIRTRQTSFQQASSAFQNMQKKQSGNLSQKSLANIVHE 177


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 27.9 bits (59), Expect = 0.66
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 29  VELWISWWGCQMIWASLRRRRRCDQEGSPVP 121
           + LW+S W  +  W+    R  C ++  P+P
Sbjct: 306 IRLWVSVWQWEGYWSFCVGRPSCSRQDIPIP 336


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 300 LKVKSSAYNALKGNLHNLEKKQTGSLLTRNL 392
           + V +   NAL+G  H +   + GSL+ +N+
Sbjct: 500 VNVMNRVNNALRGKWHEVAVGENGSLVVQNM 530


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 102 RKVAQYL*EVLEDQRDKLHENLMAN 176
           +KVAQ L E+L DQR  L  + +AN
Sbjct: 921 KKVAQRLTELLSDQRVHLPSSKIAN 945


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 61  LTAPPTDPKFHPRAEF 14
           ++ PPT PKF P  EF
Sbjct: 332 ISPPPTRPKFIPELEF 347


>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
 Frame = -3

Query: 207 SESNKWGGHC-YWPSSFHG-AYRADLQV 130
           S    +GGHC YW    H   Y  DL V
Sbjct: 372 SRDQNFGGHCYYWDQKQHDHPYEHDLYV 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,680,095
Number of Sequences: 5004
Number of extensions: 30973
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)