Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0244
(413 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272... 75 2e-14
09_02_0213 - 5842150-5842261,5842729-5842925 31 0.28
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451... 31 0.48
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219... 29 1.9
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203... 29 1.9
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638... 29 1.9
11_08_0098 - 28334865-28336114,28336228-28336357 28 2.6
04_04_0960 + 29704009-29705679 27 4.5
03_05_0086 - 20642873-20643033,20643384-20643504,20643698-206437... 27 4.5
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 27 4.5
03_02_0600 - 9748382-9748933,9749805-9749840,9751164-9751218,975... 27 7.8
02_03_0121 + 15468894-15468906,15469008-15469193,15474157-154746... 27 7.8
>05_07_0331 -
29324967-29326256,29326919-29327020,29327226-29327278,
29327628-29327674,29327762-29327841,29327933-29328016,
29328383-29328433,29328925-29329050,29329231-29329347,
29329710-29329851,29329986-29330053,29330509-29330608,
29330713-29330840,29330929-29330997,29331083-29331205
Length = 859
Score = 74.9 bits (176), Expect = 2e-14
Identities = 39/102 (38%), Positives = 57/102 (55%)
Frame = +3
Query: 87 VEGVTRKVAQYL*EVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIADI 266
+EGV+ K+ + + E LE L + + TYLTRF WD KYP L+ I
Sbjct: 69 IEGVSHKIRRQI-EELERAGGVESGALTVDGVPVDTYLTRFVWDEGKYPTMSPLKEIVGS 127
Query: 267 ISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNL 392
I QV +I+ D+KV+ + YN ++ L + +KQTGSL R+L
Sbjct: 128 IQSQVSKIEDDMKVRGAEYNNVRSQLSAINRKQTGSLAVRDL 169
>09_02_0213 - 5842150-5842261,5842729-5842925
Length = 102
Score = 31.5 bits (68), Expect = 0.28
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +2
Query: 185 PPHLFDSLPMGHG*VPHKAESAEYRRHHKQTGRTDRRGSEGQVLRLQRSQRKPTQFREET 364
P H +L H VPH A+ R H +Q ++RG EG+ + ++K + T
Sbjct: 13 PRHAVQTLLCRHAAVPHVGRRAQ-RAHRRQPTTRNQRGKEGKWKNKRGKKKKRGKMSGIT 71
Query: 365 DRE 373
++E
Sbjct: 72 NKE 74
>03_01_0614 +
4515515-4515540,4515988-4516209,4516681-4516768,
4517084-4517123,4517259-4517305,4517464-4517584,
4517931-4518091
Length = 234
Score = 30.7 bits (66), Expect = 0.48
Identities = 13/43 (30%), Positives = 29/43 (67%)
Frame = +3
Query: 132 LEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIA 260
L+++ ++LH+ + + DLPT++ +++ A Y KQ+L ++A
Sbjct: 187 LDEESEELHQKFLEKDIDLPTFVQKYKKLRAAYH-KQALLHLA 228
>12_01_0292 +
2193309-2193338,2193565-2193640,2193744-2195203,
2195479-2195505,2195794-2196024,2196523-2196692,
2197278-2197421,2198036-2198083,2198503-2198566
Length = 749
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 103 LVTPSTTSQACPDHLTA 53
+ T STT+ ACPDH TA
Sbjct: 631 MTTVSTTASACPDHRTA 647
>02_04_0039 -
19118632-19118820,19119018-19119395,19120151-19120345,
19120425-19120502,19120567-19120752,19120828-19121058,
19121137-19121490,19121588-19121785,19121869-19122039,
19122156-19122263,19122362-19122580,19122665-19122871,
19122978-19123196,19123315-19123389,19123749-19123901
Length = 986
Score = 28.7 bits (61), Expect = 1.9
Identities = 26/82 (31%), Positives = 35/82 (42%)
Frame = -1
Query: 296 RVDLSDLFAYDVGDIPQTLLYGVLSHVPLEASQISGEVTVIGHQVFMELIALIFKYLSQV 117
R + D FA + + +T L G V +E S+ TV G A + Y S
Sbjct: 427 RDEKPDNFAREAKEFLRTRLIGKQVTVEMEYSRRIS--TVDGQPTTNTADARVLDYGSVF 484
Query: 116 LGYLPGHTFDDVSSLPRSSDSP 51
LG DDVSS+P S + P
Sbjct: 485 LGSPSQADGDDVSSIPSSGNQP 506
>01_07_0353 +
42962769-42962972,42963062-42963138,42963571-42963817,
42963907-42964476,42964998-42965171,42965514-42965640,
42965719-42965828,42966707-42966907,42966999-42967966,
42968110-42968358,42968760-42969105
Length = 1090
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 292 SICPTCLLMMSAIFRRLC 239
S+CP CL ++S F+RLC
Sbjct: 199 SVCPNCLPLISKHFQRLC 216
>11_08_0098 - 28334865-28336114,28336228-28336357
Length = 459
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 137 FKYLSQVLGYLPGHTFDDVSSLPRSSDSPTN 45
F Y ++ YL H D LP ++D+PTN
Sbjct: 122 FSYYARSSSYLEPHPQQDALVLPDAADAPTN 152
>04_04_0960 + 29704009-29705679
Length = 556
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 210 GSESNKWGGHCYWPSSFHGAYRADLQVPLTGTG 112
GS W + P +F GAY++ LQV +T TG
Sbjct: 349 GSGGGGWD-KLFQPFNFFGAYKSYLQVDVTVTG 380
>03_05_0086 -
20642873-20643033,20643384-20643504,20643698-20643744,
20643882-20643921,20644331-20644418,20644949-20645161,
20645589-20645628,20646332-20646416
Length = 264
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +3
Query: 132 LEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIA 260
L+++ ++LH+ + + DLPT++ + + Y KQ+L ++A
Sbjct: 217 LDEESEELHQKFLEKDIDLPTFVQKHKKLRTAYH-KQALLHLA 258
>01_01_0588 +
4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 27.5 bits (58), Expect = 4.5
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 222 AKYPIKQSLRNIADIISKQVGQIDAD-LKVKSSAYNALKGNLHNLEKKQTGSL 377
AK+P+K SL + A+++S + I +K SS Y + K + N K Q G L
Sbjct: 162 AKFPLKSSLPHSAEVVSFSIYDITLSFIKFWSSNYPS-KTWMQNDTKSQQGFL 213
>03_02_0600 -
9748382-9748933,9749805-9749840,9751164-9751218,
9751588-9751697,9751955-9752602
Length = 466
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 10 AGIRHEGGTLDQLVGLSDDL 69
AGIR+EG T+ QL G+ D L
Sbjct: 64 AGIRYEGLTVKQLQGIRDTL 83
>02_03_0121 +
15468894-15468906,15469008-15469193,15474157-15474650,
15475090-15475521,15475597-15475821,15476065-15476346,
15476432-15476704,15477680-15477805,15481010-15481288,
15481313-15481588,15481670-15482113,15482200-15482397,
15482574-15482732,15482832-15483085,15483164-15483316,
15483395-15483683,15483769-15483807,15483913-15483951
Length = 1386
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 97 TPSTTSQACPDHLTAPPTDPKFHPRAEFLQPG 2
TP+ + A +H TA P P P +PG
Sbjct: 113 TPTEPTAASTEHATASPAQPPLTPVTPSTEPG 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,781,909
Number of Sequences: 37544
Number of extensions: 236634
Number of successful extensions: 835
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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