Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0244
(413 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_19720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_192| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_52596| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_50112| Best HMM Match : PHD (HMM E-Value=0.0011) 27 6.1
SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19) 27 8.1
SB_4275| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_21227| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
>SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +3
Query: 267 ISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQT 368
I QV QI+ DLK KS+AYN +KG L +LE+K T
Sbjct: 106 ILTQVSQIEHDLKTKSAAYNNIKGTLASLERKST 139
Score = 31.1 bits (67), Expect = 0.38
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1
Query: 31 GTLDQLVGLSDDLGKLET 84
GTLD LVGLSDDL K+++
Sbjct: 43 GTLDTLVGLSDDLNKVDS 60
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 236 KAESAEYRRHHKQTGRTDRRGSEGQVLRLQRSQRKPTQFREETD 367
+ + E R +KQ+GR +R G+ + +R QR+ + RE D
Sbjct: 1032 RRDRQEKERPYKQSGRGERNDRRGERYQDRREQREREEDREPRD 1075
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 112 ATFLVTPSTTSQACPDHLTAPPTDPKFHPRAE 17
A L TP+ ++Q+CP + P + PRAE
Sbjct: 1125 APVLPTPTVSAQSCPQKIIPTTKFPPYVPRAE 1156
>SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 28.3 bits (60), Expect = 2.6
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 179 Q*PPHLFDSLPMGHG*VP-HKAESAEYRRHHKQTGRTDRRGSEGQ 310
Q P +SLP+G G +P K+ A + QTG TD+ GS GQ
Sbjct: 501 QQPKEEKESLPVG-GIIPIPKSALATRDKAGSQTGSTDQTGSHGQ 544
>SB_19720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = -1
Query: 227 LSHVPLEASQISGEVTVIGHQVFMELIALIFKYLSQV 117
+SHVPL A+ ++ + T Q F+ L+ + ++L+QV
Sbjct: 250 ISHVPLSAASVTDQDT--RQQQFLRLLRHLMRHLAQV 284
>SB_192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Frame = -2
Query: 97 TPSTTSQACPDHLTAP------PTDPKFHPR 23
TP T + AC +H TAP P P ++PR
Sbjct: 275 TPLTAASACNEHFTAPYGNITSPNYPGYYPR 305
>SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1154
Score = 27.5 bits (58), Expect = 4.6
Identities = 21/85 (24%), Positives = 41/85 (48%)
Frame = +3
Query: 108 VAQYL*EVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIADIISKQVGQ 287
VA++ ++ D+R KL ENL + + LP ++ M K RNI+ ++
Sbjct: 1057 VAEFQLRLVIDRRSKLQENLSSMSRKLPAPMS----TMLKNCSPHQERNISAVLCHGGVG 1112
Query: 288 IDADLKVKSSAYNALKGNLHNLEKK 362
D +++ + L ++ NL++K
Sbjct: 1113 YDDMIRLNRLGISRLPDSMVNLKRK 1137
>SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 27.1 bits (57), Expect = 6.1
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 254 IPQTLLYGVLSHVPLEASQISGEVTVIGHQVFMELIALIFKYLSQVLGY-LPGHTF 90
+P L ++ VPL V +G F+ +AL+F +L+ VLGY L G TF
Sbjct: 517 VPSFPLLLLIPVVPLILMAFIRRVRKLGPVSFISNLALLFAFLA-VLGYMLTGWTF 571
>SB_52596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 27.1 bits (57), Expect = 6.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 51 HQLIQSSTLVPNSCSPG 1
H++++SS+ NSCSPG
Sbjct: 43 HKIVKSSSRASNSCSPG 59
>SB_50112| Best HMM Match : PHD (HMM E-Value=0.0011)
Length = 357
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 56 CQMIWASLRRRRRCDQEGSPVPVRG 130
C++IW SL+ QE P PV G
Sbjct: 315 CEIIWTSLKLANLFTQEQLPTPVLG 339
>SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1295
Score = 27.1 bits (57), Expect = 6.1
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = -3
Query: 213 IGSESNKWGGHCYWPSS-FHGAYRADLQVPLTGTGLPSWSHLRRRLKLAQII*Q-PHQLI 40
+GSES + GHC W ++ D L L + + R L L I+ P L
Sbjct: 1026 MGSESQDFQGHCCWDATMLRTLLLVDTATVLRALSLVDIATVLRALSLVNIVTALPKMLY 1085
Query: 39 QSSTLVP 19
++ L P
Sbjct: 1086 ENIVLSP 1092
>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
Length = 1199
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 227 VPHKAESAEYRRHHKQTGRTDRRGSEGQVLRLQRSQRKPTQFREETDR 370
+P +A R RT R SEG V + R R PT + E +R
Sbjct: 953 LPTRALHVGDSRRRTDKYRTPRVHSEGNVRQDTRKTRNPTSYSEGDER 1000
>SB_4275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 101 GHTFDDVSSLPRSSDSPTN*SKVPPSCRIP 12
GH ++ S L ++ +SP N +PP C +P
Sbjct: 33 GHAWEQCS-LKKALESPDNLLDIPPPCLLP 61
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 101 GHTFDDVSSLPRSSDSPTN*SKVPPSCRIP 12
GH ++ S L ++ +SP N +PP C +P
Sbjct: 110 GHAWEQCS-LKKALESPDNLLDIPPPCLLP 138
>SB_21227| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 231 GT*PCPIGSESNKWGGHCYWPSSF 160
G+ PCP GS S W H P F
Sbjct: 55 GSLPCPYGSYSGNWRQHDSSPCGF 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,033,404
Number of Sequences: 59808
Number of extensions: 253093
Number of successful extensions: 1060
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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