Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0243
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    56   2e-08
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    52   2e-07
01_07_0145 + 41449629-41449698,41449785-41449873,41451842-41452255     30   1.1  
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515...    29   2.5  
02_01_0584 - 4326072-4326094,4326306-4326885                           28   4.4  
11_04_0154 + 14172294-14172459,14172993-14173054,14174781-141748...    27   7.7  
08_01_0624 - 5440405-5441071,5441931-5442265                           27   7.7  
03_05_0301 + 22928864-22929787                                         27   7.7  
01_06_1124 - 34679205-34680926,34681438-34682811                       27   7.7  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
 Frame = +1

Query: 277 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 456
           C   + +QI  E  AS  Y ++ AYF  D V   GFAK F +++ EER+HA KL+ Y  M
Sbjct: 91  CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150

Query: 457 RG---KLTGSVTDLITYRGP 507
           RG   +L   VT L  +  P
Sbjct: 151 RGGRVRLQSIVTPLTEFDHP 170


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +1

Query: 310 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 480
           E  AS  Y ++ AYF  D V   GFAK F +++ EER+HA KLI Y  MRG   +L   V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193

Query: 481 TDLITYRGP 507
           T L  +  P
Sbjct: 194 TPLTEFDHP 202


>01_07_0145 + 41449629-41449698,41449785-41449873,41451842-41452255
          Length = 190

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 186 TRCCPSSCHSYTVLRQPRH 242
           +RCCPSS  S   LR PRH
Sbjct: 62  SRCCPSSSSSPFALRHPRH 80


>02_05_0624 -
           30451032-30451140,30451294-30451409,30451506-30451580,
           30452033-30452093,30452198-30452424
          Length = 195

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 337 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 453
           A+  YF + TV  P  A  FF +   +RE  T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151


>02_01_0584 - 4326072-4326094,4326306-4326885
          Length = 200

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 261 EPLIPDGDGADVTLCSCGRS*GSNESEDSQRKQPSS 154
           EP  PD   A    CSCG + GS+ S  ++ K P++
Sbjct: 142 EPAAPDVAAA--VCCSCGAASGSSSSSSTEVKTPAA 175


>11_04_0154 +
           14172294-14172459,14172993-14173054,14174781-14174859,
           14174964-14175164,14175420-14175610
          Length = 232

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 489 HHVQGPRKHVVGERRISPRAR 551
           H+  GPR H+ G RR  PRAR
Sbjct: 18  HYATGPRTHLPGPRR-KPRAR 37


>08_01_0624 - 5440405-5441071,5441931-5442265
          Length = 333

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 141 IREIKMRAVFFGCPLTRCCP-SSCHSYTV 224
           + EI +RA+  GCP   C   SSCH   V
Sbjct: 233 LTEIGVRAILDGCPHLECLDLSSCHDIYV 261


>03_05_0301 + 22928864-22929787
          Length = 307

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 198 PSSCHSYTVLRQPRHHQG*VAHHGADLLQHDEETDPGGSGRVNP 329
           PSS HS+  + Q +HH     HH      H + +D G  G   P
Sbjct: 269 PSSGHSHDEVSQQQHHHHHHRHH------HTDGSDEGSGGAAPP 306


>01_06_1124 - 34679205-34680926,34681438-34682811
          Length = 1031

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 321 VNPVLSHGGLLLDRYGEPPRLREA 392
           +NP + H G ++D  G   RLREA
Sbjct: 355 INPDVKHFGCIIDMLGRAGRLREA 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,225,434
Number of Sequences: 37544
Number of extensions: 320079
Number of successful extensions: 845
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)