Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0243
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.8  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   6.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 482 PTSSRTGAPQTRRGRAAHQPS 544
           P+SS + +P  +   AA QPS
Sbjct: 521 PSSSTSSSPPAKGAAAAGQPS 541


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 60  VCVKA*VIQLLLSRAHIFLSIVKESVIIREIKMRAVFFG 176
           VCV A  I+ L +R H   S+ K    I + K   V  G
Sbjct: 12  VCVGALTIEELKTRLHTEQSVCKTETGIDQQKANDVIEG 50


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 465 LSPHEQVVNELGRVLAFFSRSIEE 394
           +  H Q+++ L  VLA   R ++E
Sbjct: 362 IDQHSQLIDTLENVLAIVDRLMDE 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,521
Number of Sequences: 438
Number of extensions: 2794
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)