Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0243
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ...    52   2e-07
At3g56090.1 68416.m06234 ferritin, putative similar to ferritin ...    49   2e-06
At3g11050.1 68416.m01333 ferritin, putative similar to ferritin ...    47   7e-06
At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin...    47   1e-05
At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85 hy...    40   0.001
At4g25520.1 68417.m03680 transcriptional co-regulator family pro...    29   2.8  
At1g13050.1 68414.m01513 expressed protein                             28   4.9  

>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 27/62 (43%), Positives = 35/62 (56%)
 Frame = +1

Query: 277 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 456
           C   + +QI  E   S  Y AM AYF  D +   G AK F +++ EEREHA KL++Y   
Sbjct: 97  CEAAINEQINVEYNVSYVYHAMYAYFDRDNIALKGLAKFFKESSLEEREHAEKLMEYQNK 156

Query: 457 RG 462
           RG
Sbjct: 157 RG 158


>At3g56090.1 68416.m06234 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 26/62 (41%), Positives = 34/62 (54%)
 Frame = +1

Query: 277 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 456
           C   + +QI  E   S  Y A+ AYF  D V   G AK F +++ EEREHA  L++Y   
Sbjct: 95  CEAAVNEQINVEYNVSYVYHALYAYFDRDNVALKGLAKFFKESSVEEREHAELLMEYQNK 154

Query: 457 RG 462
           RG
Sbjct: 155 RG 156


>At3g11050.1 68416.m01333 ferritin, putative similar to ferritin
           subunit cowpea2 precursor GI:2970654 (Vigna
           unguiculata); contains Pfam profile PF00210:
           Ferritin-like domain
          Length = 253

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 25/55 (45%), Positives = 30/55 (54%)
 Frame = +1

Query: 298 QIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 462
           QI  E   S  Y A+ AYF  D V   GFAK F D++ EER HA   ++Y   RG
Sbjct: 96  QINVEYNVSYVYHALYAYFDRDNVGLKGFAKFFNDSSLEERGHAEMFMEYQNKRG 150


>At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin
           [Arabidopsis thaliana] GI:1246401, GI:8163920
          Length = 255

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 24/59 (40%), Positives = 33/59 (55%)
 Frame = +1

Query: 286 MMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 462
           ++ +QI  E   S  Y +M AYF  D V   G AK F +++ EER HA K ++Y   RG
Sbjct: 97  VINEQINVEYNVSYVYHSMYAYFDRDNVAMKGLAKFFKESSEEERGHAEKFMEYQNQRG 155


>At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85
           hypothetical protein F9F8.14 - Arabidopsis thaliana,
           EMBL:AC009991
          Length = 355

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +1

Query: 301 IQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDY 447
           I  E   S  Y A+ AY   D V   GF K F D++ EER +A K ++Y
Sbjct: 297 IDVEYNVSYVYHALDAYIERDNVGLKGFTKFFNDSSLEERGYAEKFMEY 345


>At4g25520.1 68417.m03680 transcriptional co-regulator family
           protein contains similarity to GP|18033922|gb|AAL57277
           SEUSS transcriptional co-regulator [Arabidopsis
           thaliana]
          Length = 748

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 374 APASRSYSSMLRLKNASTRPSSLTTCS*GES*QAP*PTSSRTGAPQTRR 520
           A A  +Y SML  +NA   P+S T    G S Q P P S+++ +  +++
Sbjct: 558 AAALTNYQSMLMRQNAMNNPNSNTGKQEGFSSQNPTPNSNQSPSSSSQQ 606


>At1g13050.1 68414.m01513 expressed protein
          Length = 317

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 453 HEGKADRLRNRPHHVQGPRKHVVGERRISPRAR 551
           H+G      N PHH Q P+ H V   R+  + R
Sbjct: 21  HQGGPSSSWNSPHHHQIPQAHSVAPPRVKIKTR 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,670,358
Number of Sequences: 28952
Number of extensions: 228652
Number of successful extensions: 601
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)