Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0242
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    60   2e-10
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    57   2e-09
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    48   7e-07
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    42   8e-05
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    27   1.8  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    25   7.4  
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    25   9.8  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   9.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   9.8  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   9.8  

>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 23/65 (35%), Positives = 48/65 (73%)
 Frame = +2

Query: 2   DPEDVIKNAFGCFDEENDGVIGEERLRELLTTMGDRFTDDDVDEMLREAPIRDGLFDYVE 181
           DPE+ +K  F  FD++  G+IG   LR +LT++G++ +++++DE+L+  P++DG+ +Y +
Sbjct: 75  DPEEFVKG-FQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKDGMVNYHD 133

Query: 182 FTRIL 196
           F +++
Sbjct: 134 FVQMI 138


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 25/66 (37%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
 Frame = +2

Query: 2   DPEDVIKNAFGCFDEENDGVIGEERLRELLTTMGDRFTDDDVDEMLREAPI-RDGLFDYV 178
           D E+ ++ AF  FD++ +G I  E L  +LT++G+R + ++V +M+REA    DG+ +Y 
Sbjct: 82  DNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYE 141

Query: 179 EFTRIL 196
           EF+R++
Sbjct: 142 EFSRVI 147



 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 20  KNAFGCFDEENDGVIGEERLRELLTTMGDRFTDDDVDEMLREAPI-RDGLFDYVEFTRIL 196
           + AF  FD + DG I    L  ++ ++G   T  ++ +M+ E     +G  D+ EF  ++
Sbjct: 15  REAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMM 74

Query: 197 KHGAKDKDEQ 226
               KD D +
Sbjct: 75  ARKMKDTDNE 84


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 48.4 bits (110), Expect = 7e-07
 Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = +2

Query: 8   EDVIKNAFGCFDEENDGVIGEERLRELLTTMGDRFTDDDVDEMLREA-PIRDGLFDYVEF 184
           E+ IK AF  FD++N G I   +  + + T+G++ +D++V  M++EA P   G FDY +F
Sbjct: 78  EEYIK-AFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDF 136

Query: 185 TR 190
            +
Sbjct: 137 VQ 138


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 41.5 bits (93), Expect = 8e-05
 Identities = 23/72 (31%), Positives = 39/72 (54%)
 Frame = +2

Query: 5   PEDVIKNAFGCFDEENDGVIGEERLRELLTTMGDRFTDDDVDEMLREAPIRDGLFDYVEF 184
           P + +  AF  FD+   G I    +R+ L++MGDR    +V+ +LR +    G+F Y +F
Sbjct: 115 PRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVESILR-SYTSHGVFYYEKF 173

Query: 185 TRILKHGAKDKD 220
              +  G+KD +
Sbjct: 174 VDAIA-GSKDSN 184


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 148 CFPEHFIHIIVCKAIAHCGKQL-AESLLTNHTIVLFIEAPKCIF 20
           CF   F H I C A+    K + +   +T +T++ +  +P  I+
Sbjct: 137 CFASIFFHAIACYALYLLTKSIFSNQKMTAYTVIFYCFSPSGIY 180


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/34 (29%), Positives = 24/34 (70%)
 Frame = -1

Query: 304 NFSWLFHSAYLLHQLKSAARHGKLNLLLVLVFSA 203
           +F+ +F+S ++L    + A++GK+NL +++  +A
Sbjct: 237 SFTSIFYSVFMLSIYYAIAKNGKVNLDMLIDVNA 270


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = +2

Query: 44  EENDGVIGEERLRELLTTMGDRFTDDDVDEMLR 142
           E+N  VI  +++ + + ++G+R +  D++E +R
Sbjct: 111 EKNAYVINLKQIAKFVVSLGERVSPTDIEEGMR 143


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 111 LQTMMWMKCSGKHQSAMDSSIMWNSRV 191
           + T+++++  G H+   D+SI W  R+
Sbjct: 507 IATIVFIQSEGSHRDIADNSIAWVLRI 533


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/68 (22%), Positives = 31/68 (45%)
 Frame = +2

Query: 17  IKNAFGCFDEENDGVIGEERLRELLTTMGDRFTDDDVDEMLREAPIRDGLFDYVEFTRIL 196
           ++NA+    + ND +  E++  +L+TT    F  ++ D  + E P   G+    E   + 
Sbjct: 202 VENAYITNSQYNDTLDMEDQTSDLITT----FEHENEDHEVHEVPSIHGMEGTFETVNLT 257

Query: 197 KHGAKDKD 220
                +K+
Sbjct: 258 SEAGNEKE 265


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 292 LFHSAYLLHQLKSAARHGKL 233
           L HSAY+LH++++    G+L
Sbjct: 32  LRHSAYVLHKIRTILTFGRL 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,091
Number of Sequences: 5004
Number of extensions: 44660
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)