Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0242
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   0.89 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   6.3  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   6.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 485 CVVESTTSSLIEIF*IHIKLTYSKKNYTSYVSLAKYNIISS*DGLHTFQLY 333
           C   +TTS + E    HIK + +K N  S +++         DG H ++++
Sbjct: 140 CRYVTTTSGMFEALCNHIKYSTNKGNIRSAITIFPQRT----DGKHDYRVW 186


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = -1

Query: 403 PVMLVWQNIIS*ALKTDCIHFNFIDENSIK 314
           PVM VW   +     T C      D N I+
Sbjct: 180 PVMGVWGRFVPEGFLTSCSFDYLTDTNEIR 209


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 136 AQGSTNPRWTLR 171
           A+G  NPRW  R
Sbjct: 311 ARGKKNPRWEFR 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,506
Number of Sequences: 438
Number of extensions: 2887
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)