Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0241
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    25   1.8  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   2.4  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    24   4.3  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    24   4.3  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    24   4.3  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    24   5.6  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    23   9.9  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    23   9.9  

>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 60  KIEKYNSF*KSRSPFSLPSSLDQSFPKNYPP 152
           K +K N+  KS S    P SLD + P+ YPP
Sbjct: 330 KAKKINANHKSSSR---PISLDATIPRKYPP 357


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 254 GIPSFFRYCQTNGELLRSRQRRK 186
           G  S F  C  NG+ LRS+Q  K
Sbjct: 30  GTASLFEACVYNGDFLRSKQLLK 52


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = -3

Query: 272  AKIKVKGIPSFFRYCQTN-GELLRSRQRRKV*FINSFFI-LRWRVVFREALIQRTWQ*KW 99
            A +  +G+P+F+R C +      RS  RR++  I  FFI +  +  +  ++  R+W   W
Sbjct: 2154 AFVVYRGLPNFYRQCPSKIPAFYRSLFRRRL--IMWFFISVFLQNYWMSSVYGRSWAFMW 2211

Query: 98   TS 93
            ++
Sbjct: 2212 SA 2213


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 175  INYTFLRCLDLRSSPLV*QYRKNDGIPLTLIFAKTEL 285
            I+Y     L L  SPLV   RKND   L +I +   L
Sbjct: 1345 ISYVNSSLLPLMQSPLVFCLRKNDANDLDVILSVCNL 1381


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 73  YFSILNWWW 47
           YF  +NWWW
Sbjct: 170 YFQHVNWWW 178


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 193 RCLDLRSSPLV*QYRKNDGIPL-TLIFAKT 279
           RC D+R+S  + QY      P+ +++F+K+
Sbjct: 215 RCFDIRASAEIFQYSSPSSSPINSVLFSKS 244


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 108 LPSSLDQSFPKNYPPPQNEKTIYKL 182
           LPSSLDQ+ P+ Y      K IY L
Sbjct: 378 LPSSLDQNVPQ-YKRDFRRKLIYFL 401


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 132 FPKNYPPPQNE 164
           FP NYP P+N+
Sbjct: 122 FPPNYPEPKND 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,079,427
Number of Sequences: 5004
Number of extensions: 18906
Number of successful extensions: 44
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)