Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0241
         (304 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510...    27   2.1  
06_03_1221 - 28514952-28518152                                         27   3.7  

>07_01_0678 -
           5103836-5104613,5104697-5104888,5104994-5105036,
           5105712-5105835,5105924-5106016,5106754-5106931,
           5107032-5107138,5108098-5108179,5108277-5108314,
           5108409-5108495,5109025-5109135,5109282-5109773
          Length = 774

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 93  RSPFSLPSSLDQSFPKNYPPPQNE 164
           RS   +PSS D   P + PPPQ E
Sbjct: 29  RSAPPMPSSADADAPSSPPPPQQE 52


>06_03_1221 - 28514952-28518152
          Length = 1066

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 178 NYTFLRCLDLRSSPLV 225
           N+T LRCLDLRS+  V
Sbjct: 322 NWTSLRCLDLRSNSFV 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,219,807
Number of Sequences: 37544
Number of extensions: 98590
Number of successful extensions: 218
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)