Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0241
         (304 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9848| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.2  
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.2  
SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17)                27   3.9  
SB_6259| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.9  

>SB_9848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 96  SPFSLPSSLDQSFPKNYPPPQNE 164
           +PF  P +LD++ P + PPP +E
Sbjct: 351 APFREPQTLDEAPPLDEPPPMSE 373


>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1696

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 258 QRDTVIFPILSN*WRTPKVKTAKKS 184
           ++  +IFPI ++ W TP V   KKS
Sbjct: 546 EKQGIIFPIPNSEWATPVVPVVKKS 570



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 258  QRDTVIFPILSN*WRTPKVKTAKKS 184
            ++  +IFPI ++ W TP V   KKS
Sbjct: 1196 EKQGIIFPIPNSEWATPVVPVVKKS 1220


>SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17)
          Length = 1178

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 51  HQFKIEKYNSF*KSRSPFSLPSSLDQSFPKNYPPPQNEKTI 173
           H  K+ K N+F   R P  + SS+ +  PKN PPP N K +
Sbjct: 280 HIMKVGK-NNF---RPPPKVESSVVRIEPKNPPPPVNFKMV 316


>SB_6259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 303 HKSLYPKLCLCKNQSQRDTVIFPILSN*WRTPKVKTAKKS 184
           HK ++ KL   +  +Q+  V+FP     WR  K++   K+
Sbjct: 213 HKEMFSKLGGGRKHAQKKLVVFPDGIQTWRPDKMEKLSKA 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,342,311
Number of Sequences: 59808
Number of extensions: 111366
Number of successful extensions: 224
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)