Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0241
         (304 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    22   4.4  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    22   5.9  
CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    21   7.8  

>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 173 NSFFILRWRVVFREALIQRTWQ*KWTSRFLE 81
           N F   +W+ + RE     T+   W SR  E
Sbjct: 110 NIFLTTKWQQLLRELANLATYLIPWESRIKE 140


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 242 FFRYCQTNGELLRSRQRRKV 183
           F R C+T  E L  +QRRKV
Sbjct: 697 FERSCRTIIEQLLDQQRRKV 716


>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 279 CLCKNQSQRDTVIFPILS 226
           CLC  + +R  +  PIL+
Sbjct: 5   CLCSKEKKRPQISSPILN 22


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,181
Number of Sequences: 2352
Number of extensions: 3960
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 55
effective length of database: 434,619
effective search space used: 19557855
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)