Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0241
         (304 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-6|AAC17030.1|  382|Caenorhabditis elegans Innexin prote...    26   4.5  
U29380-6|AAP68926.1|  272|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z74033-2|CAA98476.2|  419|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z74033-1|CAA98475.2|  460|Caenorhabditis elegans Hypothetical pr...    25   7.9  
AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine re...    25   7.9  
AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine r...    25   7.9  

>AF067219-6|AAC17030.1|  382|Caenorhabditis elegans Innexin protein
           15 protein.
          Length = 382

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 76  LYFSILNWWWDYSIKYIIEQA 14
           LY+S +NWW    +K +++ A
Sbjct: 118 LYWSTVNWWSGLQVKAVVDVA 138


>U29380-6|AAP68926.1|  272|Caenorhabditis elegans Hypothetical
           protein ZK546.17 protein.
          Length = 272

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 51  HQFKIEKYNSF*KSRSPFSLP 113
           H FKI  YN      SPF+LP
Sbjct: 28  HMFKIGSYNEAVGESSPFALP 48


>Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical
           protein D1081.3 protein.
          Length = 752

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 105 SLPSSLDQSFPKNYPPPQNEKTIYKLHFSSLS*P*EFAISLTISEK 242
           S P   +  F K+      E+T+YK  F     P + A    I+EK
Sbjct: 671 SYPEDSNDYFLKSMMAKNTERTVYKAMFDQFDSPEQDARGSVINEK 716


>Z74033-2|CAA98476.2|  419|Caenorhabditis elegans Hypothetical
           protein F38B7.1b protein.
          Length = 419

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +3

Query: 45  SHHQFKIEKYNSF*KSRSPFSLPSSLDQSFPKNYPPPQNEKTIYK 179
           S HQ  I +  +   + SP+S P     + P    PP     +YK
Sbjct: 117 SQHQMSIGQ--NLVSASSPYSTPQLTPMATPNGQAPPPKNPKLYK 159


>Z74033-1|CAA98475.2|  460|Caenorhabditis elegans Hypothetical
           protein F38B7.1a protein.
          Length = 460

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +3

Query: 45  SHHQFKIEKYNSF*KSRSPFSLPSSLDQSFPKNYPPPQNEKTIYK 179
           S HQ  I +  +   + SP+S P     + P    PP     +YK
Sbjct: 158 SQHQMSIGQ--NLVSASSPYSTPQLTPMATPNGQAPPPKNPKLYK 200


>AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 61 protein.
          Length = 327

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 252 DTVIFPILSN*WRTPKVKTAKKSV 181
           +T+ FPI+ N W+   +K  K S+
Sbjct: 197 NTIYFPIIGNYWKRIAMKILKSSI 220


>AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 75 protein.
          Length = 327

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 252 DTVIFPILSN*WRTPKVKTAKKSV 181
           +T+ FPI+ N W+   +K  K S+
Sbjct: 197 NTIYFPIIGNYWKRIAMKILKSSI 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,863,179
Number of Sequences: 27780
Number of extensions: 99647
Number of successful extensions: 223
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)