Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0241
         (304 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   0.47 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   1.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   5.8  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          20   7.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   7.7  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 0.47
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = +3

Query: 96  SPFSLPSSLDQSFPKNYP----PPQNEKTIYKL 182
           SP+  P     SFP  YP     PQ++ TI  L
Sbjct: 380 SPYGYPIGSGGSFPSLYPMATTSPQSQSTIQTL 412


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 235 RKNDGIPLTLIFAKTELRIE 294
           R  DG+PLTL +   E+ I+
Sbjct: 79  RIQDGVPLTLGYVTREVSID 98


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 139 LGKL*SNELGNENGLRDF*KLLYFSILN 56
           +  L +  + N N  +++ K LY++I+N
Sbjct: 315 ISSLSNKTIHNNNNYKNYNKKLYYNIIN 342


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 254  GIPSFFRYCQTNGEL 210
            G+P+   YCQT  ++
Sbjct: 1199 GVPTTVTYCQTEEDV 1213


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 254  GIPSFFRYCQTNGEL 210
            G+P+   YCQT  ++
Sbjct: 1195 GVPTTVTYCQTEEDV 1209


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -1

Query: 64 ILNWWWDY 41
          +L+ WWDY
Sbjct: 67 LLSVWWDY 74


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -1

Query: 64  ILNWWWDY 41
           +L+ WWDY
Sbjct: 189 LLSVWWDY 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,303
Number of Sequences: 438
Number of extensions: 1397
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)