Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0241
         (304 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16510.1 68416.m02107 C2 domain-containing protein contains s...    27   2.4  
At3g12400.1 68416.m01545 tumour susceptibility gene 101 (TSG101)...    25   7.4  
At5g64190.1 68418.m08060 expressed protein                             25   9.7  

>At3g16510.1 68416.m02107 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 360

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 96  SPFSLPSSLDQSFPKNYPPPQNEKTIYKLHFSSLS*P 206
           +P  +PS    S   NYPPPQ+ +  +    SS+  P
Sbjct: 174 NPMDIPSDFS-SATTNYPPPQSSEANFYPPLSSIGYP 209


>At3g12400.1 68416.m01545 tumour susceptibility gene 101 (TSG101)
           family protein contains Pfam profile PF05743: Tumour
           susceptibility gene 101 protein (TSG101); similar to
           Tumor susceptibility gene 101 protein
           (Swiss-Prot:Q99816) [Homo sapiens]
          Length = 398

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 96  SPFSLPSSLDQSFPKNYPP 152
           S  S P S DQS P+ +PP
Sbjct: 177 SSLSRPPSADQSLPRPFPP 195


>At5g64190.1 68418.m08060 expressed protein
          Length = 502

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 159 FEVEGSF*GSFDPTN 115
           FEVE S  GSFDP N
Sbjct: 346 FEVERSIEGSFDPPN 360


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,390,333
Number of Sequences: 28952
Number of extensions: 90136
Number of successful extensions: 231
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)