Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0237
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    38   0.001
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    33   0.021
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    30   0.20 
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    29   0.34 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.34 
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    29   0.34 
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    29   0.34 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    29   0.60 
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    28   0.79 
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    28   1.0  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   1.0  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    28   1.0  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    27   2.4  
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   3.2  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   3.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.2  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    25   7.3  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    25   9.7  

>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
 Frame = +3

Query: 147 FS*MNNLCFTR---KKDKRKSLEPS----SISAGNSPLRTRPASQSLSIAPRTSAYDKKD 305
           F  MN L  T+   K DKR SL        +   +  L    AS+++  +  +  +    
Sbjct: 294 FQQMNKLAVTKIMKKFDKRTSLTAQPLFFQVIESDPLLLVDNASKAICFSLSSKLFSIIP 353

Query: 306 VMKEWICGICRKELVEPRLLGCLHSFCTSCL 398
            ++++ C IC     +P  LGC H FC  CL
Sbjct: 354 QLRDFECAICSNVAYKPVRLGCSHVFCLHCL 384


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 33.5 bits (73), Expect = 0.021
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 297 KKDVMKEWICGICRKELVEPRLLGCLHSFCTSCL-QGLHQEGAC 425
           +++V +E  C IC   L +P +  C H+FC  CL Q L Q   C
Sbjct: 160 QENVSRELECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQC 203


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 324 CGICRKELVEPRLLGCLHSFCTSCLQG-LHQEGACELWSEVDRES 455
           C IC +    P +  C H+FC+ C++  L +   C      ++ES
Sbjct: 29  CLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPACRAPEQES 73


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 282 TSAYDKKDVMKEWICGICRKELVEPRLLG-CLHSFCTSCLQ 401
           TSA + K       C +C  E  + R++  C H FC  C+Q
Sbjct: 613 TSAEELKTFRAMCKCSVCNFERWKDRIISLCGHGFCYQCIQ 653


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +3

Query: 177 RKKDK--RKSLEPSSISAGNSPLRTRPASQSLSIAPRTSAY--DKKDVMKE 317
           +KKD+  RK  E      G  P   RP S   ++AP +S++  DK DV++E
Sbjct: 740 KKKDREHRKHRETEEEDEGPPPQPARPESTRPALAPPSSSHSNDKYDVIQE 790


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 297 KKDVMKEWICGICRKELVEPRLLGCLHSFCTSC 395
           K+D+   ++C IC+K+   P    C H FC  C
Sbjct: 247 KEDI--PFVCLICKKDYRSPIATTCGHHFCEQC 277


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 4/116 (3%)
 Frame = +3

Query: 90  PNVGQRAFHIRKSTTINRFFS*MNNLCFTRKKDKRKSLEPSSISAGNSPLRTRPA-SQSL 266
           PN+  +  H R S   N   S  +N    R + K K +   S+    + +   P  +  +
Sbjct: 6   PNLNNKE-HNRASEKKN---SRTHNKKTNRNQSKEKPVSSRSVETPKNAVCLEPVGTDPV 61

Query: 267 SIAPRTSAYDKKDVMKEWICGICRKELVEPRLLGCLHSFCTSC---LQGLHQEGAC 425
           S      A  ++    E IC IC + +    +L C H  C  C   L+ L++   C
Sbjct: 62  SNVATVDASKEEQDEDEQICFICAEGITYSCVLPCNHRMCHVCALRLRALYKTKEC 117


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 204 EPSSISAGNSPLRTRPASQSLSIAPRTSAYDKKDVMKEWICGICR 338
           E   +SA +   RT   S S  I     +Y KKD +  W C  CR
Sbjct: 850 EQMLVSASHLSGRTTRNSASPGIVSGKKSYAKKDQVLSWACLSCR 894


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 324 CGICRKELVE-PRLLGCLHSFCTSCL 398
           C IC  E ++ P LL C H+ C  CL
Sbjct: 877 CPICCNEPIQNPLLLNCKHACCGDCL 902


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 324 CGICRKELVEPRLLGCLHSFCTSCLQG 404
           C +C + +  P    C H FC SC+ G
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCING 282


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 306 VMKEWICGICRKELVEPRLLGCLHSFCTSCL 398
           + K   C IC + L  P    C H++C  CL
Sbjct: 79  IKKTLECPICTEALQRPFTTHCGHTYCYECL 109


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 321  ICGICRKELVEPRLLGCLHSFCTSCLQG-LHQEGACEL 431
            IC ICR  + +  +  C H +C+ CL+  L    +C +
Sbjct: 1091 ICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPM 1128


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 171 FTRKKDKRKSLEPSSISAGNSPLRTRPASQSL 266
           FTR+  KRK  E + +S   S   +R  SQSL
Sbjct: 216 FTRRHTKRKEKERACLSQNQSSNASRANSQSL 247


>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 321 ICGICRKELVEPRLLGCLHSFCTSCLQ 401
           IC IC +++  P +L     FC  C+Q
Sbjct: 256 ICKICGEKIKNPAVLSTGFVFCYPCIQ 282


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 8/31 (25%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 324 CGICRKELVEPRLL-GCLHSFCTSCLQGLHQ 413
           C +C     + +L+  C H+FC++C++  ++
Sbjct: 639 CSVCNFSNWKSKLIPNCGHAFCSNCMEPFYE 669


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = +3

Query: 192  RKSLEPSSISAGNSPLRTRPA----SQSLSIAPRTSAYDKKDVMKEWICGICRKELVEPR 359
            RKSL  S  +  N  +R  P     SQ     P T+   K+ +++  I  +C   L   R
Sbjct: 1883 RKSLALSKSAYHNLLVRDSPKFNPDSQITYSIPVTNT--KQSLLRSAI--LCVISLQRLR 1938

Query: 360  LLGCLHSFCTSCLQGL 407
            LLG  HSFC   ++ L
Sbjct: 1939 LLGQRHSFCEEVIENL 1954


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 405 LHQEGACELWSEVDRESIQQDP 470
           L     C  WSE  R+SI  DP
Sbjct: 189 LRHSAWCISWSEAQRQSIYSDP 210


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 172 SPARRTSGSHWS 207
           SP RRTSG+ WS
Sbjct: 487 SPIRRTSGNRWS 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,916
Number of Sequences: 5004
Number of extensions: 48696
Number of successful extensions: 173
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)