Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0237
(550 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger) fa... 42 2e-04
At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger) fa... 40 0.001
At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger) fa... 40 0.001
At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger) fa... 38 0.004
At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) fa... 38 0.004
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa... 36 0.018
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa... 36 0.018
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa... 36 0.018
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa... 36 0.018
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa... 36 0.018
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa... 36 0.018
At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger) fa... 36 0.024
At3g26240.1 68416.m03274 DC1 domain-containing protein contains ... 36 0.024
At5g40140.1 68418.m04871 armadillo/beta-catenin repeat family pr... 34 0.072
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq... 33 0.095
At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger) fa... 33 0.13
At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger) fa... 33 0.13
At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger) fa... 33 0.13
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 33 0.17
At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger) fa... 32 0.22
At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger) fa... 32 0.22
At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger) fa... 32 0.22
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 32 0.29
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 32 0.29
At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger) fa... 32 0.29
At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger) fa... 31 0.38
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 31 0.38
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 31 0.38
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 31 0.51
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ... 31 0.51
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 31 0.67
At2g25380.1 68415.m03039 zinc finger protein-related very low si... 31 0.67
At5g38880.1 68418.m04702 expressed protein 30 0.89
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 30 0.89
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 30 0.89
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing... 30 0.89
At2g02690.1 68415.m00208 hypothetical protein 30 0.89
At3g47160.1 68416.m05120 expressed protein similar to MTD2 [Medi... 30 1.2
At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger) fa... 30 1.2
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 30 1.2
At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger) fa... 29 1.5
At5g43040.1 68418.m05254 DC1 domain-containing protein contains ... 29 1.5
At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger) fa... 29 1.5
At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger) fa... 29 1.5
At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) fa... 29 2.0
At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger) fa... 29 2.0
At1g65430.1 68414.m07423 zinc finger protein-related contains we... 29 2.0
At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger) fa... 29 2.0
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 29 2.0
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 29 2.7
At5g43030.1 68418.m05250 DC1 domain-containing protein contains ... 29 2.7
At1g36050.1 68414.m04479 expressed protein 29 2.7
At1g24440.1 68414.m03079 expressed protein similar to MTD2 [Medi... 29 2.7
At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger) fa... 28 3.6
At5g18330.1 68418.m02157 U-box domain-containing protein weak si... 28 3.6
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ... 28 3.6
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 28 3.6
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa... 28 3.6
At1g48450.1 68414.m05416 expressed protein 28 3.6
At5g58787.1 68418.m07365 zinc finger (C3HC4-type RING finger) fa... 28 4.7
At5g03190.1 68418.m00267 expressed protein 28 4.7
At3g62980.1 68416.m07075 transport inhibitor response 1 (TIR1) (... 28 4.7
At3g26250.1 68416.m03275 DC1 domain-containing protein contains ... 28 4.7
At2g44410.1 68415.m05523 expressed protein 28 4.7
At1g44020.1 68414.m05078 DC1 domain-containing protein contains ... 28 4.7
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 28 4.7
At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger) fa... 27 6.2
At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger) fa... 27 6.2
At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger) fa... 27 6.2
At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to ... 27 6.2
At3g46990.1 68416.m05103 hypothetical protein contains Pfam prof... 27 6.2
At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger) fa... 27 6.2
At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE... 27 6.2
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 27 6.2
At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to... 27 6.2
At1g34480.1 68414.m04285 DC1 domain-containing protein contains ... 27 6.2
At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger) fa... 27 6.2
At1g05890.1 68414.m00617 zinc finger protein-related contains lo... 27 6.2
At4g36040.1 68417.m05130 DNAJ heat shock N-terminal domain-conta... 27 8.3
At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger) fa... 27 8.3
At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger) fa... 27 8.3
At4g02540.1 68417.m00347 DC1 domain-containing protein contains ... 27 8.3
At2g32210.1 68415.m03936 expressed protein 27 8.3
At2g02680.1 68415.m00207 DC1 domain-containing protein contains ... 27 8.3
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin... 27 8.3
At1g70630.1 68414.m08141 expressed protein 27 8.3
>At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 248
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +3
Query: 249 PASQSLSIAPRTSAYDKKDVMKEWICGICRKEL---VEPRLLGCLHSFCTSCL 398
PASQS A RT +D++KE +C IC++E E + L CLH + +SC+
Sbjct: 113 PASQSAIEAVRTVIITDEDLVKEKVCAICKEEFEVGEEGKELKCLHLYHSSCI 165
>At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 623
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 297 KKDVMKEWICGICRKELVEPRLLGCLHSFCTSCLQ 401
K ++KE+ C ICRK L P C H+FC +CL+
Sbjct: 489 KARLLKEFSCQICRKVLSLPVTTPCAHNFCKACLE 523
>At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 622
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 297 KKDVMKEWICGICRKELVEPRLLGCLHSFCTSCLQ 401
K ++KE+ C ICRK L P C H+FC +CL+
Sbjct: 489 KARLLKEFSCQICRKVLSLPVTTPCAHNFCKACLE 523
>At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 617
Score = 37.9 bits (84), Expect = 0.004
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 297 KKDVMKEWICGICRKELVEPRLLGCLHSFCTSCLQ 401
K ++KE+ C ICR+ L P C H+FC +CL+
Sbjct: 486 KARLLKEFSCQICREVLSLPVTTPCAHNFCKACLE 520
>At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 660
Score = 37.9 bits (84), Expect = 0.004
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 306 VMKEWICGICRKELVEPRLLGCLHSFCTSCLQ 401
++KE+ C IC+K + P C H+FC +CL+
Sbjct: 522 LLKEFKCQICQKVMTNPVTTPCAHNFCKACLE 553
>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 642
Score = 35.9 bits (79), Expect = 0.018
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 306 VMKEWICGICRKELVEPRLLGCLHSFCTSCLQ 401
++KE+ C IC++ L P C H+FC +CL+
Sbjct: 509 LLKEFKCQICQQVLTLPVTTPCAHNFCKACLE 540
>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 645
Score = 35.9 bits (79), Expect = 0.018
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 306 VMKEWICGICRKELVEPRLLGCLHSFCTSCLQ 401
++KE+ C IC++ L P C H+FC +CL+
Sbjct: 512 LLKEFKCQICQQVLTLPVTTPCAHNFCKACLE 543
>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 491
Score = 35.9 bits (79), Expect = 0.018
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCL-QGLHQEGACEL 431
C +C K L EP C H+FC SCL Q + + C L
Sbjct: 196 CTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNKCPL 232
>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 35.9 bits (79), Expect = 0.018
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCL-QGLHQEGACEL 431
C +C K L EP C H+FC SCL Q + + C L
Sbjct: 196 CTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNKCPL 232
>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 35.9 bits (79), Expect = 0.018
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCL-QGLHQEGACEL 431
C +C K L EP C H+FC SCL Q + + C L
Sbjct: 196 CTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNKCPL 232
>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 35.9 bits (79), Expect = 0.018
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCL-QGLHQEGACEL 431
C +C K L EP C H+FC SCL Q + + C L
Sbjct: 196 CTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNKCPL 232
>At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 426
Score = 35.5 bits (78), Expect = 0.024
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 321 ICGICRKELVEPRLLGCLHSFCTSCL-QGLHQEGACEL 431
+C IC++++ P LL C H FC C+ + +E C L
Sbjct: 364 LCAICQEKMHTPILLRCKHMFCEDCVSEWFERERTCPL 401
>At3g26240.1 68416.m03274 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 922
Score = 35.5 bits (78), Expect = 0.024
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 315 EWICGICRKELVEPRLLGCLHSFCTSCLQGLHQEGACE--LWSEVDRESIQQD 467
+WICG+CR+++ G H CL +H + A + +W ++RE ++
Sbjct: 532 DWICGVCRRKINND--YGGYHCIKKGCLYAVHSKCATQPNVWDGIEREGESEE 582
>At5g40140.1 68418.m04871 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 550
Score = 33.9 bits (74), Expect = 0.072
Identities = 19/81 (23%), Positives = 38/81 (46%)
Frame = +3
Query: 156 MNNLCFTRKKDKRKSLEPSSISAGNSPLRTRPASQSLSIAPRTSAYDKKDVMKEWICGIC 335
+N + + DK +L AG S RT + S S + ++ K ++ E++C I
Sbjct: 8 INLMVLHSQHDKSDNLSRRESLAGKSKWRTSLSRSSSSSSSNNNSPTKTEIPAEFLCPIS 67
Query: 336 RKELVEPRLLGCLHSFCTSCL 398
+ +P ++ HS+ +C+
Sbjct: 68 GSLMADPIIVSSGHSYERACV 88
>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
ubiquitin ligase, contains two RING finger domain;
identical to PRT1 [Arabidopsis thaliana] GI:3319884
Length = 410
Score = 33.5 bits (73), Expect = 0.095
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 300 KDVMKE-WICGICRKELVEPRLLGCLHSFCTSCLQGLHQE 416
K + K+ +C C++ LV P +L C H +C C+ + +E
Sbjct: 183 KQISKDDLLCSACKELLVRPVVLNCGHVYCEGCVVDMAEE 222
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +3
Query: 270 IAPRTSAYDKKDVMKEWICGICRKELVEPRLLGCLHSFCTSCL 398
I + ++++ +++C +C + L +P +L C H C C+
Sbjct: 8 ITMKNDESQEEEIPDQFLCCVCLELLYKPIVLSCGHLSCFWCV 50
>At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 260
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 255 SQSLSIAPRTSAYDKKDVMKEWICGICRKELVEPRLLGCLHSFCTSC 395
S+ ++ R+S + + +E CGIC + + L C HS C C
Sbjct: 139 SKKITKEARSSRFSNAGLEREEECGICLETCTKMVLPNCCHSMCIKC 185
>At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 713
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCLQGLHQ-EGACELWSEVDRESIQQD 467
C +C K L P LL C H FC SC+ Q E C + + ++D
Sbjct: 25 CPLCLKLLNRPVLLPCDHVFCDSCVHKSSQVESGCPVCKSKHPKKARRD 73
>At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 714
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCLQGLHQ-EGACELWSEVDRESIQQD 467
C +C K L P LL C H FC SC+ Q E C + + ++D
Sbjct: 25 CPLCLKLLNRPVLLPCDHVFCDSCVHKSSQVESGCPVCKSKHPKKARRD 73
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 32.7 bits (71), Expect = 0.17
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +3
Query: 285 SAYDKKDVMKEWICGICRKELVEPRLLGCLHSFCTSCLQGLHQEGACEL 431
S + + +W+C IC+ + VE ++ C H C C + + C L
Sbjct: 4647 SMKEAETAKSQWLCQICQTKEVEVTIVPCGHVLCRHCSTSVSRCPFCRL 4695
>At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger)
family protein contains similarity to autocrine motility
factor receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 577
Score = 32.3 bits (70), Expect = 0.22
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCLQGLHQEGACELWS 437
C ICR+ + + + L C H F CL+ +G E++S
Sbjct: 337 CAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYS 374
>At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger)
family protein similar to autocrine motility factor
receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 578
Score = 32.3 bits (70), Expect = 0.22
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCLQGLHQEGACELWS 437
C ICR+ + + + L C H F CL+ +G E++S
Sbjct: 337 CAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYS 374
>At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger)
family protein similar to autocrine motility factor
receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 578
Score = 32.3 bits (70), Expect = 0.22
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCLQGLHQEGACELWS 437
C ICR+ + + + L C H F CL+ +G E++S
Sbjct: 337 CAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYS 374
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 31.9 bits (69), Expect = 0.29
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 315 EWICGICRKELVEPRLLGCLHSFCTSCLQ 401
E C IC + EP C HSFC CL+
Sbjct: 721 ELSCAICLEICFEPSTTTCGHSFCKKCLR 749
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 31.9 bits (69), Expect = 0.29
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 303 DVMKEWICGICRKELVEPRLLGCLHSFCTSCL 398
D+ K+ +C IC + + + L C HSFC C+
Sbjct: 45 DLDKDLLCPICMQIIKDAFLTACGHSFCYMCI 76
>At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger)
family protein low similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 427
Score = 31.9 bits (69), Expect = 0.29
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Frame = +3
Query: 189 KRKSLEPSSISAGNSPLRTRPASQSLSIAPRT-SAY---DKKDVMKEWICGICRKELVEP 356
KR +E A ++ SQS S + S Y D D+ K+ C IC + +
Sbjct: 54 KRDQVEAEDEEALGEEEDSKERSQSSSAGELSESEYMVVDLADICKDVQCSICLGIIRKT 113
Query: 357 R-LLGCLHSFCTSCLQGLHQEG--ACELWSE--VDRESIQQDP 470
R ++ CLH FC C+ + G C + R S++ DP
Sbjct: 114 RTVMECLHRFCRECIDKSMRLGNNECPTCRKHCASRRSLRDDP 156
>At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 31.5 bits (68), Expect = 0.38
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCLQGLHQE 416
C IC+ ++P + C H FC C H E
Sbjct: 86 CSICQNPFLDPVVTNCNHYFCDKCALKHHTE 116
>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P31244 DNA
repair protein RAD16 {Saccharomyces cerevisiae};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 638
Score = 31.5 bits (68), Expect = 0.38
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 243 TRPASQSLSIAPRTSAYDKKDVMK--EWICGICRKELVEPRLLGCLHSFCTSCL 398
TR S + +APR + D++K C +C +P + C H FC C+
Sbjct: 366 TRKMSDGVRVAPRENLIMFLDLLKLSSTTCSVCSDPPKDPVVTLCGHVFCYECV 419
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 31.5 bits (68), Expect = 0.38
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 294 DKKDVMKEWICGICRKELVEPRLLGCLHSFCTSC 395
D+ + + C ICR+ V+P + C H FC C
Sbjct: 267 DEDENALPFACFICREPFVDPVVTKCKHYFCEHC 300
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 31.1 bits (67), Expect = 0.51
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 225 GNSPLRTRPASQSLSIAPRTSAYDKKDVMKEWICGICRKELVEPRLL-GCLHSFCTSCL 398
G+ +R +A SA +K E C IC E+ + L GC H FC +CL
Sbjct: 1528 GSKEMRQEVQKMVNELAREKSALGEKPDEIELECPICLSEVDDGYSLEGCSHLFCKACL 1586
>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 513
Score = 31.1 bits (67), Expect = 0.51
Identities = 16/62 (25%), Positives = 24/62 (38%)
Frame = +3
Query: 207 PSSISAGNSPLRTRPASQSLSIAPRTSAYDKKDVMKEWICGICRKELVEPRLLGCLHSFC 386
P N P + S S+ + Y K EW C IC + + + +L H C
Sbjct: 382 PLEFKCLNLPKLVKYKYDSHSLTLYSDKYYSKSFQLEWWCEICEENINKKKLFYTCHECC 441
Query: 387 TS 392
T+
Sbjct: 442 TT 443
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 30.7 bits (66), Expect = 0.67
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 225 GNSPLRTRPASQSLSIAPRTSAYDKKDVMKEWICGICRKELVEPRLL-GCLHSFCTSCL 398
G+ +R +A SA +K E C IC E+ + L GC H FC +CL
Sbjct: 1531 GSKEMRQEVQKMVNELAREKSALGEKPDEIEVECPICLSEVDDGYSLEGCSHLFCKACL 1589
>At2g25380.1 68415.m03039 zinc finger protein-related very low
similarity to SP|O95376 Ariadne-2 protein homolog
(ARI-2) (Triad1 protein) {Homo sapiens}; contains Pfam
profile PF01485: IBR (In Between Ring fingers) domain
Length = 350
Score = 30.7 bits (66), Expect = 0.67
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 270 IAPRTSAYDKKDVMKEWICGICRKELVEPRLL---GCLHSFCTSCLQ 401
I ++S+ + K+ E C IC +E V R+ CLH +C SC++
Sbjct: 183 IVSKSSSVNVKEAQGE-TCVICLEETVADRMFFTDKCLHRYCFSCVK 228
>At5g38880.1 68418.m04702 expressed protein
Length = 796
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -1
Query: 460 WIDSLSTSLHNSQAPS-*CRP*RQLVQKLWRQPSS 359
W+ L T++ N+QA S C+ R L+ + W QP+S
Sbjct: 728 WLPELRTAVQNAQASSEHCKYVRGLLDEWWEQPAS 762
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 30.3 bits (65), Expect = 0.89
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 294 DKKDVMKEWICGICRKELVEPRLLGCLHSFCTSC 395
D+ + + C ICR+ ++P + C H FC C
Sbjct: 302 DEDENALPFACFICREPFLDPVVTKCKHYFCEHC 335
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 30.3 bits (65), Expect = 0.89
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 294 DKKDVMKEWICGICRKELVEPRLLGCLHSFCTSC 395
D+ + + C ICR+ ++P + C H FC C
Sbjct: 302 DEDENALPFACFICREPFLDPVVTKCKHYFCEHC 335
>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
profile PF03105: SPX domain, weak hit to PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 335
Score = 30.3 bits (65), Expect = 0.89
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSC 395
C IC + + P L C H FC SC
Sbjct: 231 CAICLETVFNPYALKCGHIFCNSC 254
>At2g02690.1 68415.m00208 hypothetical protein
Length = 623
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 309 MKEWICGICRKELVEPRLLGCLHSFCTSCLQGLHQEGA--CELWSEVDRESIQQD 467
+++W CG+CR+E+ G ++ C +H A ++W ++ E +Q+D
Sbjct: 302 LEKWSCGVCRREVDHD--YGA-YTCCVCSGYAVHTRCALRTDIWDGIELEGVQED 353
>At3g47160.1 68416.m05120 expressed protein similar to MTD2
[Medicago truncatula] GI:9294812; supporting cDNA
gi|25083983|gb|BT002136.1|
Length = 245
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 303 DVMKEWICGICRKELVEPRLLGCLHSFCTSCLQGLH 410
D+ +E CGIC + L C HS C C + H
Sbjct: 140 DIEREEECGICMEMNNMVVLPNCTHSLCIKCYRDWH 175
>At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 321 ICGICRKELVEPRLLGCLHSFCTSCLQGLHQEGA 422
+C IC P C H FC +C+ + + G+
Sbjct: 9 LCSICHSHFTAPCQANCSHWFCGNCIMLVWRHGS 42
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 300 KDVMKEWICGICRKELVEPRLLGCLHSFCTSCLQ 401
K+++K CG+C E ++ C H FC C+Q
Sbjct: 326 KNILK---CGVCFDRPKEVVIVKCYHLFCQQCIQ 356
>At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger)
family protein contains similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 486
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Frame = +3
Query: 294 DKKDVMKEWICGICRKELVEPR-LLGCLHSFCTSCLQ-----GLHQEGACELWSEVDRES 455
D ++ K+ C IC + + R ++ CLH FC C+ G ++ AC R S
Sbjct: 126 DLGEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRKHC-ASRRS 184
Query: 456 IQQDP 470
++ DP
Sbjct: 185 LRDDP 189
>At5g43040.1 68418.m05254 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 551
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 318 WICGICRKELVEPRLLGCLHSFCTSCLQGLHQEGA--CELWSEVDRESI-QQDP 470
W CG+CRKE+ + G C +C +H A +W ++ E + ++DP
Sbjct: 191 WSCGVCRKEV--NGMHGAFS--CLTCTFAVHSRCAIRSNVWDGIELEGVPEEDP 240
>At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 281
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCLQG-LHQEGAC 425
C ICR+E+ + L C H F CL+ L ++ C
Sbjct: 113 CIICREEMTSAKKLVCGHLFHVHCLRSWLERQNTC 147
>At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 389
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCLQG-LHQEGAC 425
C ICR+E+ + L C H F CL+ L ++ C
Sbjct: 221 CIICREEMTSAKKLVCGHLFHVHCLRSWLERQNTC 255
>At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 137
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 270 IAPRTSAYDKKDVMKEWICGICRKELVEPRLLGCLHSFCTSCL 398
+A T ++ D + C IC + EP + C H FC CL
Sbjct: 1 MAINTITNEEDDASNNFGCNICLELAREPIVTLCGHLFCWPCL 43
>At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domains PF00533: BRCA1 C Terminus (BRCT) domain and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 453
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +3
Query: 246 RPASQSLSIAPRTSAYDKKDVMKEWICGICRKELVEPR-LLGCLHSFCTSCLQ 401
+P S T A +K C IC E R +L C H FC SC+Q
Sbjct: 276 KPQDDDESTREETEATEKAPAQVS--CIICWTEFSSSRGILPCGHRFCYSCIQ 326
>At1g65430.1 68414.m07423 zinc finger protein-related contains weak
similarity to zinc finger proteins and a Pfam:PF01485
IBR domain
Length = 567
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +3
Query: 324 CGICRKELVEPRL--LGCLHSFCTSCLQG 404
CGIC + + +L C H FC SC +G
Sbjct: 128 CGICFETFLSDKLHAAACGHPFCDSCWEG 156
>At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger)
family protein
Length = 421
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 297 KKDVMKEWI-CGICRKELVEPRLLG-CLHSFCTSCL 398
KK+ M+ + C IC L + + CLH+FC C+
Sbjct: 6 KKETMRACLSCSICDNILRDATTISECLHTFCRKCI 41
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCLQG 404
CG+C + + C H FC +CL G
Sbjct: 579 CGLCHDPAEDYVVTSCAHVFCKACLIG 605
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCLQGLHQEGACEL 431
C IC + +P L C H C CL + +C L
Sbjct: 1040 CPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGL 1075
>At5g43030.1 68418.m05250 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 564
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 318 WICGICRKELVEPRLLGCLHSFCTSCLQGLHQEGA--CELWSEVDRESI-QQDP 470
W CG+CRKE+ + G C +C +H A +W ++ E + ++DP
Sbjct: 186 WSCGVCRKEV--NGMYGAYS--CLTCTFVVHSRCAIRSNVWDGIELEGVPEEDP 235
>At1g36050.1 68414.m04479 expressed protein
Length = 386
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 507 RIRRNPSLILIRQDLVGLTLYRLRSTIHKHPPDADPEDSWCRSCGGSPA 361
R+ N + I RQD +G T ++ + + KH +++C SC G+ A
Sbjct: 108 RLDSNGNTIEARQDGIGAT--KIENPLQKHGGRLGHNETYCGSCYGAEA 154
>At1g24440.1 68414.m03079 expressed protein similar to MTD2
[Medicago truncatula] GI:9294812
Length = 251
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 303 DVMKEWICGICRKELVEPRLLGCLHSFCTSC 395
D+ +E CGIC + + L C H+ C C
Sbjct: 148 DLEREDECGICLEPCTKMVLPNCCHAMCIKC 178
>At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 508
Score = 28.3 bits (60), Expect = 3.6
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSC 395
C +C + GC H FCT+C
Sbjct: 321 CAVCLERKCTVAADGCAHEFCTNC 344
>At5g18330.1 68418.m02157 U-box domain-containing protein weak
similarity to immediate-early fungal elicitor protein
CMPG1 [Petroselinum crispum] GI:14582198; contains Pfam
profile PF04564: U-box domain
Length = 445
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 303 DVMKEWICGICRKELVEPRLLGCLHSFCTS-CLQGLHQEGACELWSEV 443
+V KE+IC + K ++EP L+ +F S L+ L E C +V
Sbjct: 64 EVPKEFICTLSNKIMIEPMLIASGQTFEKSYILEWLKHERTCPRTKQV 111
>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 656
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 315 EWICGICRKELVEPRLLGCLHSFCTSCLQ-GLHQEGAC--ELWSEVDRESIQQDP 470
+W CG+CRK++ C C C +H A +LW D E + ++P
Sbjct: 305 KWSCGVCRKKVDN----NCGAYTCNKCSHYFVHTRCALREDLWDGKDLEGVPEEP 355
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 300 KDVMKEWICGICRKELVEPRLLG-CLHSFCTSCLQ 401
K+V C IC + + CLH+FC SC++
Sbjct: 8 KEVKPCLACPICTNPFKDATTISECLHTFCRSCIR 42
>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 492
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCLQG-LHQEGAC 425
C ICR+E+ + L C H F CL+ L ++ C
Sbjct: 292 CIICREEMTNAKKLICGHLFHVHCLRSWLERQQTC 326
>At1g48450.1 68414.m05416 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 549 NCPQSLNVSSHSRIRIRRNPSLILIRQDLVGLTLYRLR 436
NCP + +SS + R+R+N SL R G T + R
Sbjct: 28 NCPGFMRISSGPQFRLRQNSSLKFSRPFQSGTTCVKSR 65
>At5g58787.1 68418.m07365 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 242
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 303 DVMKEWICGICRKELVEPRLLGCLHSFCTSC 395
++ +E CGIC + + L C HS C C
Sbjct: 137 EIEREEECGICMEMNSKVVLPNCTHSLCIKC 167
>At5g03190.1 68418.m00267 expressed protein
Length = 451
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -3
Query: 449 SIDFAPQFTSTLLMQTL---KTAGAEAVEAAQQPRFHQFFPTYPADPLLHYIFFV 294
S+ + P+F L ++L AE ++A P + FFP YP D ++FV
Sbjct: 274 SVAYLPKFLDLSLKKSLVYIDIGAAEHMDANLTPNW--FFPLYPLDSKAFNVYFV 326
>At3g62980.1 68416.m07075 transport inhibitor response 1 (TIR1)
(FBL1) E3 ubiquitin ligase SCF complex F-box subunit;
identical to transport inhibitor response 1 GI:2352492
from [Arabidopsis thaliana]
Length = 594
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +1
Query: 358 GCWAASTASAPAVFRVCIRRVLVNCGAKSIESQS-NKIL---PNQDQAWV 495
G W A A PAV+ VC R +N +++S K+L P + WV
Sbjct: 272 GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321
>At3g26250.1 68416.m03275 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 490
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 321 ICGICRKELVEPRLLGCLHSFCTSCLQGLHQEGACE--LWSEVDRESIQQD 467
ICG+CR+++ G H C +H + A + +W + RE ++
Sbjct: 100 ICGVCRRKINND--YGGYHCIKNGCFYAVHSKCATQTNVWDGIGREGESEE 148
>At2g44410.1 68415.m05523 expressed protein
Length = 413
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCLQGL 407
C IC ++ +P L C H FC C L
Sbjct: 125 CNICLEKAEDPILTCCGHLFCWGCFYQL 152
>At1g44020.1 68414.m05078 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 577
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 282 TSAYDKKDVMKEWICGICRKELVEPRLLGCLHSFCTSCLQGLHQEGACE--LWSEVDRES 455
T+++D+ D W CG+CR+++ G C H A + +W +D E
Sbjct: 454 TTSFDEGD----WSCGVCRRKIDND--YGGFSCIKDGCSYAAHSRCATQKNVWDGIDLEG 507
Query: 456 IQQD 467
+ ++
Sbjct: 508 VPEE 511
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +3
Query: 309 MKEWICGICRK----ELVEPRLLGCLHSFCTSCLQGL 407
M+E C +C + E PR+L C H+ C CL L
Sbjct: 1 MEEPECPVCLQSYDGESTVPRVLACGHTACEECLTNL 37
>At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 315 EWICGICRKELVEPRLLGCLHSFCTSCLQ-GLHQEGAC 425
++ C IC E C H FC C++ + ++G C
Sbjct: 145 KFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGKC 182
>At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 315 EWICGICRKELVEPRLLGCLHSFCTSCLQ-GLHQEGAC 425
++ C IC E C H FC C++ + ++G C
Sbjct: 145 KFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGKC 182
>At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 315 EWICGICRKELVEPRLLGCLHSFCTSCLQ-GLHQEGAC 425
++ C IC E C H FC C++ + ++G C
Sbjct: 145 KFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGKC 182
>At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to
embryonic flower 1 [Arabidopsis thaliana] GI:15430697
Length = 1096
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 405 DPEDSW-CRSCGGSPAASVPPILSYISRRSTPSLHL 301
+PE S+ C+ G ++S PI ++ S S P+LHL
Sbjct: 827 NPEFSFGCKHAAGVSSSSSRPIDNFSSESSIPALHL 862
>At3g46990.1 68416.m05103 hypothetical protein contains Pfam profile
PF05340: Protein of unknown function (DUF740)
Length = 547
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -2
Query: 444 RLRSTIHKHPPDADPEDSWCRSCGGSPAASVPPILSYISRRSTPSLHLFCRKLRSLAL 271
R S+ H+HP A P +C SC ++ S ++ TP L R++RS ++
Sbjct: 11 RSSSSCHRHP-SAKPTSGFCASCLRERLVTIEAQSSSLAAVQTPEL----RRIRSYSV 63
>At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam:PF01485 IBR
domain
Length = 537
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 369 CLHSFCTSCLQGLHQEGACELWSEVDRE 452
C H FC +CLQ L AC + + D E
Sbjct: 320 CRHYFCWACLQPLSDHKACNAF-KADNE 346
>At2g31510.1 68415.m03850 IBR domain-containing protein /
ARIADNE-like protein ARI7 (ARI7) identical to
ARIADNE-like protein ARI7 [Arabidopsis thaliana]
GI:29125028; contains similarity to Swiss-Prot:Q94981
ariadne-1 protein (Ari-1) [Drosophila melanogaster];
contains Pfam profile PF01485: IBR domain
Length = 562
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +3
Query: 315 EWICGICRKELVEPRL--LGCLHSFCTSCLQG 404
E CGIC ++ + C H FCT+C G
Sbjct: 134 ELTCGICFDSYPPEKIASVSCGHPFCTTCWTG 165
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 261 SLSIAPRTSAYDKKDVMKEWICGICRKELVEPRLLGCLHSFCTSCL 398
S S + S D D ++ C IC + +P + C H FC CL
Sbjct: 7 STSTSYSDSNNDTNDQGGDFECNICFELAQDPIVTLCGHLFCWPCL 52
>At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to
nitrate transporter (NTL1) GI:3377517 [Arabidopsis
thaliana]
Length = 585
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 361 CWAASTASAPAVFRVCIRRVLVNCGAKSIESQSNKILPNQDQAWVPP 501
C + S+++A A V V+ G K +ESQ P Q++A +PP
Sbjct: 262 CSSGSSSNAVASMSVSPSNHCVSKGKKEVESQGELEKPRQEEA-LPP 307
>At1g34480.1 68414.m04285 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 602
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 312 KEWICGICRKELVEPRLLGCLHSFCTSCLQGLHQEGACELWSEV-DRESIQQDP 470
++W CG+CRK+ V+ G +S C H C L +V D + ++++P
Sbjct: 245 RKWFCGVCRKK-VDENYGG--YSCVKGCYYVSHSR--CALHKDVWDGKELEEEP 293
>At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 321 ICGICRKELVEPRLLGCLHSFCTSCLQGLHQEGA 422
+C IC P C H FC +C+ + + G+
Sbjct: 9 LCSICHGHFNAPCQSNCSHWFCGNCIMLVWRHGS 42
>At1g05890.1 68414.m00617 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 552
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +3
Query: 312 KEWICGICRKE--LVEPRLLGCLHSFCTSCLQG 404
+E+ CGIC L E + C H FC +C G
Sbjct: 128 REFTCGICFDSYTLEEIVSVSCGHPFCATCWTG 160
>At4g36040.1 68417.m05130 DNAJ heat shock N-terminal
domain-containing protein (J11) identical to dnaJ heat
shock protein J11 [Arabidopsis thaliana] GI:9843641;
contains Pfam profile PF00226 DnaJ domain
Length = 161
Score = 27.1 bits (57), Expect = 8.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 316 SGSAGYVGKNWWNRGCW 366
SG YVG+NW CW
Sbjct: 145 SGLGSYVGRNWETDQCW 161
>At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCL 398
C IC + EP + C H FC C+
Sbjct: 48 CNICLDSVQEPVVTLCGHLFCWPCI 72
>At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 324 CGICRKELVEPRLLGCLHSFCTSCL 398
C IC + EP + C H FC C+
Sbjct: 48 CNICLDSVQEPVVTLCGHLFCWPCI 72
>At4g02540.1 68417.m00347 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 822
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +3
Query: 303 DVMKEWICGICRKELVEPRLLGCLHSFCTSCLQGLHQEGACE 428
D K W CG+CR+++ GC C H + A +
Sbjct: 459 DPEKYWSCGVCRRKIEND--YGCYSCVKDGCSYAAHSKCATQ 498
>At2g32210.1 68415.m03936 expressed protein
Length = 71
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +3
Query: 219 SAGNSPLRTRPASQSLSIAPRTSAYDKKDVMKEWICGICRKELVEPRLLGCLHSFCTSCL 398
S+G P T P S +AP Y D + + K + L GCL + C C+
Sbjct: 9 SSGAYP--TPPVSTGPYVAPPPLGYPTNDTSHATVATVETKSKGDGFLKGCLAAMCCCCV 66
>At2g02680.1 68415.m00207 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 649
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +3
Query: 315 EWICGICRKELVEPRLLGCLHSFCTSCLQGLHQEGAC----ELWSEVDRESIQQD 467
+W CG+CR+E+ R G C +C G C ++W + E +Q+D
Sbjct: 300 KWSCGVCRQEV--DRKYGAY--TCNAC-NGYTVHTRCALRNDIWDGKELEGVQED 349
>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
protein-related contains Pfam profiles PF03107: DC1
domain, weak hit to PF00628: PHD-finger
Length = 513
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/50 (22%), Positives = 23/50 (46%)
Frame = +3
Query: 318 WICGICRKELVEPRLLGCLHSFCTSCLQGLHQEGACELWSEVDRESIQQD 467
W CG+CRKE ++ + + C+ ++W +D E + ++
Sbjct: 166 WSCGVCRKE-IDGDYGAYICNICSGYAVHTRCALRLDIWDGIDLEGVPEE 214
>At1g70630.1 68414.m08141 expressed protein
Length = 537
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 252 ASQSLSIAPRTSAYDKKDVMKEWICGICRKELVEPRLLGCL---HSFCTSCLQGL 407
A ++ ++ + Y KD++ W+C + + L P L C ++ S LQGL
Sbjct: 269 ADKNRTVVLSVAGYSYKDMLMSWVCRL--RRLKVPNFLVCALDDETYQFSILQGL 321
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,464,692
Number of Sequences: 28952
Number of extensions: 270567
Number of successful extensions: 1170
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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