Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0235
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    29   0.30 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   1.2  
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    27   2.1  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   6.5  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   6.5  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   8.5  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   8.5  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   8.5  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +3

Query: 216  YIKCVLDEGRCTPDGKELKAHIK-DGMQTACAKCTDKQKVSARKIVKHIK--QHEADYWE 386
            +I CVL +G        +    K +G Q  C  C D  K    +++KH+K  + E+ Y +
Sbjct: 1336 HISCVLTQGAYIDLISCITKFAKLNGNQKFCLSCVDMLKNLEHELIKHLKHMKKESVYSK 1395

Query: 387  QMKAKY 404
            +++ +Y
Sbjct: 1396 KLEEEY 1401


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -2

Query: 172 MLSYLSVYFSAIDKPATNKSAAIVRHFMSAL 80
           +++ LSVY+S   +   +K   +V+HFM++L
Sbjct: 540 LMNCLSVYYSKYFEGKDSKKFTLVKHFMNSL 570


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 306 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKD 416
           A  +D+++   R  V H K H   Y +  K  +DPKD
Sbjct: 12  AASSDEERPEMRS-VSHSKSHLEGYDDDHKIAFDPKD 47


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 120 FVAGLSIAEKYTDKYDNID-VDEILENRKLL 209
           F+  ++I EKY + YD+++ VDE   ++ ++
Sbjct: 734 FLKNVAIGEKYVEPYDHMEIVDETTGDKAVI 764


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 328 RCQPERSLNTLSSTKLITGSR*RPNMIPKMNSK 426
           +  PE    ++S T+  T  +  P+ +PKMN K
Sbjct: 432 KVNPEPHSESISDTRPSTPRKVPPSTVPKMNPK 464


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 147  KYTDKYDNIDVDEILE 194
            +Y DK D  DVDEI E
Sbjct: 1038 EYIDKLDKYDVDEIAE 1053


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 418 SSLGSYLAFICSQ*SASCCLMCLTI 344
           S + SYL FI S     C  +CL I
Sbjct: 218 SEIRSYLEFILSNLDLECLTLCLKI 242


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 171 IDVDEILENRKLLVPYIKCVLDEGRCTPD--GKELKAHIKD 287
           I  D IL+    + P I  +LD+GR   +  G E KA  K+
Sbjct: 644 IRTDTILDEEVPVDPLITSILDDGRWWEEMFGSERKAGFKE 684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,534
Number of Sequences: 5004
Number of extensions: 39481
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)