Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0235
(503 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72) 30 1.2
SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016) 27 6.6
SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_39561| Best HMM Match : ELMO_CED12 (HMM E-Value=2.52234e-44) 27 8.8
SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_37501| Best HMM Match : SCP (HMM E-Value=1.2e-19) 27 8.8
SB_19059| Best HMM Match : Arm (HMM E-Value=0.044) 27 8.8
SB_12797| Best HMM Match : HECT (HMM E-Value=0) 27 8.8
>SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)
Length = 1161
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 426 EIYEGFLAGQN*TCYKCLRWY 488
+I +G L GQ C++CLRW+
Sbjct: 117 DINDGSLCGQTQCCHRCLRWW 137
>SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1175
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 426 EIYEGFLAGQN*TCYKCLRWY 488
+I +G L GQ C++CLRW+
Sbjct: 838 DINDGSLCGQTQCCHRCLRWW 858
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 369 EADYWEQMKAKYDPKDEFKEIY-EGFLAG 452
+AD W + A YD +D F +IY G L G
Sbjct: 5963 DADEWYHVAATYDSRDRFAKIYINGELKG 5991
>SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
Length = 221
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 234 DEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYD-P 410
D +C+ DG+ + +K Q A K + +K R++ + E + K K+D P
Sbjct: 95 DVAKCSQDGEGVVGPLKQLQQLAGGKASSTKKHQERQVAMVVNLSEVCNGVEAKPKHDSP 154
Query: 411 KD 416
D
Sbjct: 155 MD 156
>SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 661
Score = 27.5 bits (58), Expect = 6.6
Identities = 24/107 (22%), Positives = 43/107 (40%)
Frame = +3
Query: 171 IDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIV 350
+ D LE+ + PY C+ ++ G + ++ Q AK K+ S +
Sbjct: 541 VPCDRKLESAFAINPYPTCLYEKALAVRLGLR-DSRVQVWFQNRRAK--SKRNRSGCQSS 597
Query: 351 KHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQN*TCYKCLRWYN 491
+ Q+E DY+ + Y PK+ G+ CY+ L Y+
Sbjct: 598 TYRGQNEGDYFSPTASDYSPKNSEYHTNTSDCFGEARECYEELSTYD 644
>SB_39561| Best HMM Match : ELMO_CED12 (HMM E-Value=2.52234e-44)
Length = 520
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 145 SAIDKPATNKSAAIVRHFMSALLLNQHKSDVTQTL 41
SAI P T +V+HF SA L QH S + T+
Sbjct: 235 SAIRSP-TVTFKEVVKHFQSAAYLEQHMSYIKPTI 268
>SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 646
Score = 27.1 bits (57), Expect = 8.8
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +3
Query: 144 EKYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDK 323
EK D+ D + + +++N +LL ++K D+ DG +H D +++ C D
Sbjct: 165 EKSFDQEDQLRHEIVMKN-ELLQKFLK---DQEDLYYDG----SHTDDEQRSSDGSCKDD 216
Query: 324 QKVSARKIVKHIKQHEAD-YWEQMKAKYDPKDE 419
+ R+ K ++QH + E +K K D E
Sbjct: 217 SITNLREKCKLLEQHNSHLILEALKIKEDTASE 249
>SB_37501| Best HMM Match : SCP (HMM E-Value=1.2e-19)
Length = 351
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 231 IRILCKEPVAFGSQEFXXXXXXXXXXXTSRQSISPPRIKVQQ 106
I+ LCK P F S F S ++I+PP + V+Q
Sbjct: 243 IKQLCKTPEVFFSSCFIHNYCPLVFMNESGKNITPPNLPVEQ 284
>SB_19059| Best HMM Match : Arm (HMM E-Value=0.044)
Length = 603
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 289 ECRQRVRSVQINRRCQPERSLNTL--SSTKLITGSR 390
E R VRS++ NR C P S TL SS +T R
Sbjct: 33 EARSAVRSLKTNRPCTPTDSKRTLFGSSPAKVTEGR 68
>SB_12797| Best HMM Match : HECT (HMM E-Value=0)
Length = 749
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 225 CVLDEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQ 365
CVL++ + P+ L H ++ + + C D+ S +K+V I Q
Sbjct: 118 CVLNQPKSKPENSHLNNHAEESLLSTLKTCRDEG--SFKKLVHSIGQ 162
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,635,825
Number of Sequences: 59808
Number of extensions: 302459
Number of successful extensions: 819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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