Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0235
         (503 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30240.1 68414.m03699 PELP1-related contains weak similarity ...    31   0.33 
At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containi...    29   1.3  
At3g24260.1 68416.m03047 hypothetical protein                          29   1.3  
At5g58260.1 68418.m07294 expressed protein                             28   4.1  
At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein si...    28   4.1  
At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...    27   5.4  
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ...    27   7.2  
At3g21150.1 68416.m02672 zinc finger (B-box type) family protein...    27   9.5  
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom...    27   9.5  

>At1g30240.1 68414.m03699 PELP1-related contains weak similarity to
           PELP1 [Homo sapiens] gi|21426922|gb|AAC17708
          Length = 873

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = +3

Query: 42  SVWVTSLLC*LRSSADMKCLTIAALLFVAGLSIAEKYTDKYDNIDVDEILENRKLLVPYI 221
           SVW  SLL  L++ A  + + +A+   ++ L        ++ N   D +    KL++P I
Sbjct: 117 SVWFNSLLSHLKNPASSRIVRVASCTSISDLLTR---LSRFSNTKKDAVSHASKLILPII 173

Query: 222 KCVLDE 239
           K +LDE
Sbjct: 174 K-LLDE 178


>At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1155

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 282 KDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGF 443
           +  M TACA+C D   V ARK+ + + + +   W  M + Y    E +E    F
Sbjct: 177 RTAMVTACARCGD--VVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVF 228


>At3g24260.1 68416.m03047 hypothetical protein
          Length = 374

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
 Frame = +3

Query: 156 DKYDNIDVDEILENRKLLVPYIKCVL----DEGRCTPDGKELKAHIKDGMQTACAKCTDK 323
           D  +  + + IL N   ++P I+ V     D  R   D  E K  + + ++    + T  
Sbjct: 53  DHDEKPEENPILLNEPKMIPRIRIVYKPKDDVERKMKDRLEAKQKLTELLKAIEERLTRS 112

Query: 324 QKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFL 446
           +      + K  K H  DY + +K+     D++K +Y+ F+
Sbjct: 113 ELRVYTCLCKDFKSHRIDYSQFVKSLQRLIDKYKNLYQRFV 153


>At5g58260.1 68418.m07294 expressed protein
          Length = 209

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -3

Query: 141 QSISPPRIKVQQLLDTSCLHCFLINTKAMSPRHLTQIQCDPRAEFL 4
           Q ++PP  +  Q+     +  FL+NT++   R  T ++C   A+++
Sbjct: 9   QRVAPPCFEASQVKKIKTVGSFLVNTRS-KRRRSTGVKCSSIADYI 53


>At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 460

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +3

Query: 192 ENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAK 311
           +N++ +VP    ++ +  C  +GK  K  +++G+  AC +
Sbjct: 355 DNKEKVVPVKPSLVGQTWCVANGKTTKEKLQEGLDYACGE 394


>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 261 KELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEA 374
           K  + H+K    + C KC  K K   R IV++I +  A
Sbjct: 12  KHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAA 49


>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
           family protein low similarity to Translation initiation
           factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
           aphidicola} SP|P46243, {Salmonella typhimurium}
           SP|P33321; contains Pfam profiles PF05198: Translation
           initiation factor IF-3 N-terminal domain, PF00707:
           Translation initiation factor IF-3 C-terminal domain
          Length = 520

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = +3

Query: 132 LSIAEKYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAK 311
           L+ + +   K   +D D    N K+   Y++ V +EG C    +E     K+ +Q    +
Sbjct: 66  LATSAQTRKKEAEVDSDGPRLNEKITGDYVRLVSEEGHCVVSLREALRRAKE-LQCDLVE 124

Query: 312 CTDKQKVSARKIVKH 356
                K    KIVK+
Sbjct: 125 VQRDAKPPVCKIVKY 139


>At3g21150.1 68416.m02672 zinc finger (B-box type) family protein
           contains Pfam profile:PF01760 CONSTANS family zinc
           finger
          Length = 225

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -2

Query: 388 CSQ*SASCCLMCLTIFLADTFCLSVHFAHAVCIPSLI*ALSSFPSGVQRP 239
           C+  SA  C  C   F A  F  + HF   +C P+      +F SG   P
Sbjct: 16  CAADSAFLCRSCDAKFHASNFLFARHFRRVIC-PNCKSLTQNFVSGPLLP 64


>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain; non-consensus TG acceptor splice site at
           exon boundary 79262
          Length = 880

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 80  QCRHEVSNNCCTFIRGGLIDCR 145
           +C +E+  NCC  IRGG +  R
Sbjct: 338 KCSYELCLNCCQEIRGGWLSDR 359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,695,752
Number of Sequences: 28952
Number of extensions: 207558
Number of successful extensions: 576
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)