Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0234
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    27   1.9  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   2.5  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    26   3.3  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   4.4  
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    25   5.8  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    25   5.8  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.7  

>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 22/73 (30%), Positives = 35/73 (47%)
 Frame = +1

Query: 133 IVKNPVLTNMDNLKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITEGSR 312
           I+KN ++   D L +G     IWK D +  I+  ++  +      TV + NS   T GS+
Sbjct: 499 IIKNFMIQGGDPLGDGTGGESIWKKDFEDEISPNLKHDRPF----TVSMANSGPNTNGSQ 554

Query: 313 EHSSFDVVLSNWL 351
              + D  L+ WL
Sbjct: 555 FFITTD--LTPWL 565


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 169 LKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMI 297
           LKN   VL   K   +GN   L+E+  +V  S  ++L++ D+I
Sbjct: 115 LKNSSEVLTASKLTDEGNSKPLLEE-GEVAVSSPILLDSKDVI 156


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 131 ILQYFLNNR*RNYNAVNPSSLKKI 60
           +L+ FLNN  +NY +V+  S+K +
Sbjct: 350 VLEKFLNNHLQNYGSVSDDSIKTL 373


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +1

Query: 100 RYLLFKKYCKIIVKNPVLTNMDNL----KNGDNVLIIWKNDSQGNITSLIEDVKKVI 258
           RY+  ++ C +I +   +TN++ L     +G+ +L I         T L  D+K  I
Sbjct: 305 RYISLQEVCSVIAQQLQITNLEALNKLSSHGETLLQIMHTAFTWRGTKLFNDIKHAI 361


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 20/87 (22%), Positives = 39/87 (44%)
 Frame = +1

Query: 289 DMITEGSREHSSFDVVLSNWLPPHSVSHSDXXXXXXXXXXXPNGKLILKDLNKLTSTLKL 468
           D++   S   +S   + S WLPP S+S++             NG   L +++  +++L L
Sbjct: 353 DLLRAQSTTVASVKHLGSAWLPPRSLSYNPAEKVALLTSSADNGVYELVNVSSRSNSLPL 412

Query: 469 NGFVNVTELENNRYVAEKPKFEVGSKS 549
               N+    ++     + +F V S+S
Sbjct: 413 KD--NIKGPGDDAIFVARNRFAVFSRS 437


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 166 NLKNGDNVLIIWKNDSQGN 222
           +LK GD + I+ K D+QGN
Sbjct: 243 SLKKGDIIAILSKTDTQGN 261


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +1

Query: 232 LIEDVKKVIQSDTVVLENSDMI 297
           ++ D++  ++S+ VVLE SD++
Sbjct: 280 ILSDIRSKLESERVVLEQSDLL 301


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 153 YKHGQLEKRRQCSYYLEERQSRKHYE 230
           Y H + ++ R   YYLE+ Q R+ +E
Sbjct: 70  YLHEREQEARLQEYYLEQLQERRAFE 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,837
Number of Sequences: 5004
Number of extensions: 46240
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)