Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0234
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049...    31   0.63 
05_01_0278 + 2156126-2156128,2157677-2158069                           29   3.4  

>03_04_0020 -
           16504322-16504654,16504758-16504785,16504937-16504989,
           16505377-16505463,16505636-16505704,16506071-16506145,
           16507040-16507210,16507693-16507793,16508062-16508139,
           16508492-16508648,16508737-16509006,16509369-16509485,
           16510250-16510339,16510417-16510629,16510742-16510891,
           16511929-16512342
          Length = 801

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +1

Query: 136 VKNPVLTNMDNLKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITEGSRE 315
           VKN + T +  L  GD   II  ND   + +S +E V +    +     N++ I EG  +
Sbjct: 352 VKNAMYTTLSELVQGDYFNIITFNDELHSFSSCLEQVNEKTIENAREWVNTNFIAEGGTD 411


>05_01_0278 + 2156126-2156128,2157677-2158069
          Length = 131

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 257 FKVILWFWKTPT*SLKVPVSIHHLM 331
           FK  LWFW TP    K P S H +M
Sbjct: 34  FKTALWFWMTPRPPSK-PYSCHDVM 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,889,140
Number of Sequences: 37544
Number of extensions: 249284
Number of successful extensions: 567
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)