Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0234
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5699| Best HMM Match : DUF689 (HMM E-Value=3.8e-10)                 43   2e-04
SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)        29   3.5  
SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35)         29   3.5  
SB_14887| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)          27   8.0  
SB_3057| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-26)                  27   8.0  

>SB_5699| Best HMM Match : DUF689 (HMM E-Value=3.8e-10)
          Length = 333

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
 Frame = +1

Query: 187 VLIIWKNDS-QGNITSLIEDV-KKVIQSDTVVLENSDMITEGSREHSSFDVVLSNWLPPH 360
           VL++W       +I +++  + KKV  +  V LE+SD +   S   SSFDVVLS      
Sbjct: 11  VLLLWSGAQLPKDIEAVVGSLTKKVGPNGKVSLEHSDRLHMASHAMSSFDVVLSGVCESP 70

Query: 361 SVSHSDXXXXXXXXXXXPNGKLILKD 438
           S+ HS            P+GKLIL++
Sbjct: 71  SLIHSMELLSKLAKLLKPDGKLILRE 96


>SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +1

Query: 181 DNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITEGSREHSSFDVVL-----SN 345
           +N L+ W     GN+TS+  D  +V + D ++  N+D  T+G+ +     V L     S 
Sbjct: 80  NNPLLTWDPTHFGNLTSINVDPLRVWRPDLILYNNADRDTDGALDRFYTKVQLKFDGSSL 139

Query: 346 WLPP 357
           WL P
Sbjct: 140 WLAP 143


>SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)
          Length = 1211

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = +1

Query: 202 KNDSQGNITSLIEDVKKVIQSDTVVLENSDMI--TEGSREHSSFDVVLSNWLPPHSVSHS 375
           KND +G I+SL +D+ ++ Q   + L++S+++   EG+R  SS     SN     + S S
Sbjct: 514 KNDCEGTISSLKKDIVQLRQK--LELKSSNVLGGVEGARRRSSSFSGRSNHSGKSTSSRS 571

Query: 376 D 378
           D
Sbjct: 572 D 572


>SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35)
          Length = 479

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +1

Query: 184 NVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITEGSREHSSFDVVLSN-----W 348
           N  + W     G I  +     +V   D V+  N+D  T+GS E+    +++S+     W
Sbjct: 42  NPFLRWNETFYGGIKEINVSPLQVWTPDLVLYNNADASTDGSLENFKTRIIVSSDGKNMW 101

Query: 349 LPPHSVSHS 375
           L P   S S
Sbjct: 102 LAPVIFSSS 110


>SB_14887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 876

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 157 NMDNLKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVV 276
           N+D+LK GD V +++K D   N     ED+    Q   VV
Sbjct: 450 NLDDLKAGDRVGLVYKEDGSLNFFINGEDMGLAAQDIPVV 489


>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
          Length = 1248

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
 Frame = +1

Query: 97  FRYLLFKKYCKII-VKNPVLTNMDNLKNGDNVLIIWKNDSQGNITSLI------EDVKKV 255
           F+ LL KK  +I+ +K+  L  +D L      + I + + Q     LI      ED+ K+
Sbjct: 229 FKSLLEKKRLQILTMKSRYLKGLDKLDFASQQVAIMQQELQELQPELIQTSKETEDLIKI 288

Query: 256 IQSDTVVLENSDMITEGSREHSS 324
           I  +T+ +E+   I +   E ++
Sbjct: 289 IAEETLEVEDKKRIVQADEEEAN 311


>SB_3057| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-26)
          Length = 236

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 260 KVILWFWKTPT*SLKVPVSIHHLMLFS 340
           K ILWFW +P   L + +S   + LF+
Sbjct: 160 KYILWFWPSPNYELIIVISCFLIPLFT 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,651,255
Number of Sequences: 59808
Number of extensions: 309714
Number of successful extensions: 744
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)