Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0234
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-11|CAB07698.2|  536|Caenorhabditis elegans Hypothetical p...    28   4.0  
AF088285-1|AAC98292.1|  536|Caenorhabditis elegans caspase-relat...    28   4.0  
U40947-1|AAC48068.1|  610|Caenorhabditis elegans Hypothetical pr...    28   5.3  
L13200-8|AAA28188.2|  324|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z93393-11|CAB07698.2|  536|Caenorhabditis elegans Hypothetical
           protein Y48E1B.13a protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 171 EKRRQCSYYLEERQSRKHYEPNRRRKKSNSK-*YC 272
           E R  CSY LEE  S+    P    KKSN K  YC
Sbjct: 251 ETRHDCSYSLEEYDSQSRM-PRTDAKKSNHKHKYC 284


>AF088285-1|AAC98292.1|  536|Caenorhabditis elegans caspase-related
           protein 1A protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 171 EKRRQCSYYLEERQSRKHYEPNRRRKKSNSK-*YC 272
           E R  CSY LEE  S+    P    KKSN K  YC
Sbjct: 251 ETRHDCSYSLEEYDSQSRM-PRTDAKKSNHKHKYC 284


>U40947-1|AAC48068.1|  610|Caenorhabditis elegans Hypothetical
           protein R03E9.2 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 350 YLPTVSHILINYWQ*SLNYSNQMVNLYSK 436
           Y+P VS I++N W  ++N    M N +S+
Sbjct: 315 YIPNVSTIILNSWMSTINELGYMGNRFSE 343


>L13200-8|AAA28188.2|  324|Caenorhabditis elegans Hypothetical
           protein ZK1236.7 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 171 EKRRQCSYYLEERQSRKHYEPNRRRKKSNSK 263
           EKR+   Y + ER+ RK  E  R +K+   +
Sbjct: 144 EKRQMREYEVREREERKRREEEREKKRDEER 174


>Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical
           protein T04H1.8 protein.
          Length = 524

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 136 VKNPVLTNMDNLKNGDNVLIIWKNDSQGNITSLIEDVKKVI 258
           +KN ++T M   K  +NVL IWK + + N T   E    +I
Sbjct: 310 LKNSLMTAM---KQMNNVLFIWKYEMEDNFTKQEELTTNII 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,833,970
Number of Sequences: 27780
Number of extensions: 253516
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)