Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0234
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14140.1 68416.m01788 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   2.1  
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont...    28   3.7  
At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein ...    27   6.5  
At4g36470.1 68417.m05179 S-adenosyl-L-methionine:carboxyl methyl...    27   8.7  
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ...    27   8.7  

>At3g14140.1 68416.m01788 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein low similarity to alkB protein
           [Escherichia coli][SP|P05050], alkB [Caulobacter
           crescentus][GI:2055386]; contains Pfam domain PF03171
           2OG-Fe(II) oxygenase superfamily
          Length = 452

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 232 LIEDVKKVIQSDTVVLENSDMITEGSREHSSFDVVLS--NWLPP 357
           L  D K V ++DT++LE+ D++  G R  + F  V S    LPP
Sbjct: 396 LYGDQKDVDKADTLILESGDVLIFGERSRNVFHGVRSIRKILPP 439


>At1g74190.1 68414.m08592 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 965

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 415 NGKLILKDLNKLTSTLK--LNGFVNVTELENNRYVAEKPKF 531
           NG ++L   NKL+ T+   L   V + +L NNR+  + P+F
Sbjct: 607 NGVVLLLQDNKLSGTIPDTLLANVEILDLRNNRFSGKIPEF 647


>At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein /
           GYF domain-containing protein contains Pfam domains
           PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
           similar), PF02213: GYF domain
          Length = 659

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 269 LWFWKTPT*SLKVPVSIHHLMLFSQTGYLP 358
           +W +K P+  ++ P S+  L  ++ TGY P
Sbjct: 195 IWHYKDPSGKVQGPFSMAQLRKWNNTGYFP 224


>At4g36470.1 68417.m05179 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to SAM:jasmonic
           acid carboxyl methyltransferase (JMT)[GI:13676829] and
           to SAM:salicylic acid carboxyl methyltransferase
           (SAMT)[GI:6002712][Clarkia breweri]
          Length = 371

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 24  SSHWLGNLPIACYLFQGRRIN 86
           S HWL  +P A Y  QG+ IN
Sbjct: 160 SLHWLSKVPTALYDEQGKSIN 180


>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
           contains weak similarity to Swiss-Prot:P10366 ATP
           phosphoribosyltransferase [Escherichia coli]
          Length = 1402

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 202 KNDSQGNITSLIEDVKKVIQSDTVVLENSDMITEGSREHSSFDV 333
           K   +G + S+I D +KV+ SD +   NS+       EH   ++
Sbjct: 579 KTTGEG-VRSIIVDGEKVLNSDAIDASNSEKFLNSLEEHQEHNL 621


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,879,770
Number of Sequences: 28952
Number of extensions: 226502
Number of successful extensions: 641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)