Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0233
         (505 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q10DX6 Cluster: Retrotransposon protein, putative, Ty3-...    33   4.8  
UniRef50_UPI000023EF3E Cluster: hypothetical protein FG11268.1; ...    32   6.4  
UniRef50_Q05FT7 Cluster: Putative uncharacterized protein; n=1; ...    32   8.5  
UniRef50_Q9UWV3 Cluster: Putative uncharacterized protein ORF-c2...    32   8.5  

>UniRef50_Q10DX6 Cluster: Retrotransposon protein, putative,
           Ty3-gypsy subclass; n=4; Oryza sativa|Rep:
           Retrotransposon protein, putative, Ty3-gypsy subclass -
           Oryza sativa subsp. japonica (Rice)
          Length = 1449

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +3

Query: 12  GTRVYLYNTMLTMCRYEIQLWYST*KFWKVEGGYPSRDSH-YSALLAVRFCSNVVFKEQY 188
           GT+V+L  T  ++  +E +L+Y   K  K   GY S  S+ Y   LA+R    ++ +   
Sbjct: 409 GTKVFLPPTAFSLSAHEKKLFYQVLKDVKFPDGYASNISNKYLLPLAIR---RILPENVC 465

Query: 189 VPIYRLPHF 215
           VP+ RL +F
Sbjct: 466 VPLIRLSNF 474


>UniRef50_UPI000023EF3E Cluster: hypothetical protein FG11268.1; n=1;
            Gibberella zeae PH-1|Rep: hypothetical protein FG11268.1
            - Gibberella zeae PH-1
          Length = 3206

 Score = 32.3 bits (70), Expect = 6.4
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +3

Query: 45   TMCRYEI-QLWYST*KFWKVEGGYPSRDSHY-SALLAVRFCSNVVFKEQYVPIYRLPHFS 218
            T+   EI QLW S  +F + +G  PS DSH+  ALLA     ++   +  V IY+ P   
Sbjct: 1612 TLLSTEISQLWASLVQFCREDGQSPSYDSHFLLALLAFDTDIDLSLIQWLVAIYKNPQLR 1671

Query: 219  CLVHRGVS 242
             L   G S
Sbjct: 1672 ALEAPGHS 1679


>UniRef50_Q05FT7 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Carsonella ruddii PV|Rep: Putative
           uncharacterized protein - Carsonella ruddii (strain PV)
          Length = 132

 Score = 31.9 bits (69), Expect = 8.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 312 CNIFNIYFYLRNIYLPRAYYPIIKYNNLVYAITSIFRVVF 431
           C +FN+Y  ++NIY+      +I YNN+++   +I  + F
Sbjct: 17  CYMFNVYVIIKNIYINSF---VINYNNIIFIKNNILLLKF 53


>UniRef50_Q9UWV3 Cluster: Putative uncharacterized protein
           ORF-c22_003; n=1; Sulfolobus solfataricus|Rep: Putative
           uncharacterized protein ORF-c22_003 - Sulfolobus
           solfataricus
          Length = 393

 Score = 31.9 bits (69), Expect = 8.5
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +2

Query: 185 ICSYISIAALQLFSAQGSFKNLFAIILANSVIFLLPK*FQFSMQYF*YLLLF--TKHLST 358
           I +++ +    + S + +FKNL  +I +NSVIF L     F+  Y  +LL +  T  ++ 
Sbjct: 260 IMAFLPLLFSVILSKRSNFKNLSILIFSNSVIFFLVP--LFTNVYILFLLFYAWTVIVAM 317

Query: 359 TRILSYN 379
             I+ YN
Sbjct: 318 ESIVDYN 324


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 455,274,220
Number of Sequences: 1657284
Number of extensions: 8856831
Number of successful extensions: 18302
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18283
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30110042232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)