Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0233
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    28   0.92 
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   4.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   6.5  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.5  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    25   8.5  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   8.5  

>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 105 LQPSKIFMYYTIVEFRIYTLSTSYYINKPS 16
           L+PSK    Y ++   + T   +YY+ KP+
Sbjct: 227 LEPSKRGRIYDVLSLEVSTTKLAYYVRKPN 256


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 64  FNYGIVHKNFGRLKVAILREIHIIQLYLLLDSVLM 168
           FNY  +      L VA+   +  I  ++LLDS+L+
Sbjct: 166 FNYSFLAATLCTLMVALDNHLATISRFILLDSMLL 200


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 283 KYH*ICQYYSKQIFETPLCTKQLKCGNRYIGTYC 182
           +YH + + + ++      C K+L CGN +    C
Sbjct: 571 RYHLLTEEFEEEHICFRPCNKKLSCGNHFCQHMC 604


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 264 WQIQ*YFCCQNDFNFQCNIFNIYFYLRNIYLPRAYYPIIKY 386
           W IQ  FC  + F     I  +Y+    I++P   + I +Y
Sbjct: 188 WYIQVAFCVTSGFFSYLFINALYYLFAIIFVPLGIWDIAEY 228


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 1   CRNSARGFIYIIRC*QCVDTKFNYGIVHKNFGRLKVAI 114
           C  + +  +YI R     D +  YG++HK F  +++ +
Sbjct: 278 CGRAVKNMVYIPR----YDKRTVYGVIHKKFHAVRLTL 311


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 429  KQLER*KLSHTQDCYILL*DNMRVVDKCFVNKSRY*KY 316
            K L   K      CY ++  N+ V+D CF  + R  KY
Sbjct: 1219 KDLSTVKKEFQNVCYQIMSGNVPVMDFCFSKEVRLEKY 1256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,914
Number of Sequences: 5004
Number of extensions: 42421
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)